Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_006369 and ABIE53_006370 are separated by 28 nucleotidesABIE53_006370 and ABIE53_006371 are separated by 162 nucleotidesABIE53_006371 and ABIE53_006372 overlap by 8 nucleotidesABIE53_006372 and ABIE53_006373 overlap by 4 nucleotides ABIE53_006369: ABIE53_006369 - PAS domain S-box-containing protein, at 2,736,794 to 2,739,595 _006369 ABIE53_006370: ABIE53_006370 - putative Zn-dependent protease, at 2,739,624 to 2,740,823 _006370 ABIE53_006371: ABIE53_006371 - putative Zn-dependent protease, at 2,740,986 to 2,742,422 _006371 ABIE53_006372: ABIE53_006372 - microcin C transport system ATP-binding protein, at 2,742,415 to 2,744,073 _006372 ABIE53_006373: ABIE53_006373 - microcin C transport system permease protein, at 2,744,070 to 2,745,185 _006373
Group Condition ABIE53_006369 ABIE53_006370 ABIE53_006371 ABIE53_006372 ABIE53_006373
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -0.4 +0.2 -1.3 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -0.7 -0.2 +0.3 -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 +0.2 -0.6 -0.9 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 +1.2 -0.6 -0.6 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 +0.2 +0.2 -0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.2 +0.7 +0.0 -0.1 +0.3
carbon source L-Threonine (C) +0.4 -0.6 -0.4 +0.6 -0.0
carbon source D,L-Malic Acid (C) -0.6 +0.5 -0.4 -0.0 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +1.0 +0.0 +0.2 -0.1
carbon source D-Galacturonic Acid (C) -0.3 +0.5 -0.5 +0.1 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 -0.5 +1.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.6 +0.7 +0.3 -0.2
carbon source Tween 20 (C) -0.3 +0.7 +0.2 -0.3 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 -0.5 +1.0 +0.5
carbon source D-Galactose (C) -0.3 +0.7 -0.4 +0.5 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.8 +0.1 +0.3 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.0 -0.2 +1.4 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +1.1 +0.4 +0.1 +0.2
carbon source m-Inositol (C) -0.1 +0.4 -0.2 +0.4 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.2 +0.9 +0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +0.7 +0.8 +0.8 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.7 -0.1 +0.8 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +1.3 +0.9 -0.3 +0.2
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.8 +0.2 +0.5 +0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.6 +0.5 +0.4 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.6 +0.5 +0.7 +0.3
carbon source D-Gluconic Acid (C) +0.2 +1.1 -0.2 +0.6 +0.5
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.5 +0.8 -0.1 +0.9 +0.1
plant outgrowth control Plant outgrowth control +0.5 +0.8 +0.3 +0.4 +0.2
plant outgrowth control Plant outgrowth control +0.3 +0.7 +0.5 +0.4 +0.2
remove
ABIE53_006369
plot		 remove
ABIE53_006370
plot		 remove
ABIE53_006371		 remove
ABIE53_006372
plot		 remove
ABIE53_006373
plot