Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_006319	ABIE53_006320	ABIE53_006321	ABIE53_006322	ABIE53_006323
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.0	+0.1	-0.8	-2.1	-3.0
carbon source	L-Proline (C)	-0.3	-0.5	-0.7	-1.5	-2.5
carbon source	Glucuronamide (C)	+0.4	-0.2	-0.8	-1.4	-3.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.0	-0.4	-0.6	-0.9	-2.2
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	+0.5	-0.1	-0.0	-0.4	-5.0
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	-0.5	-0.1	-1.3	-0.7	-2.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.0	-0.8	-0.7	-3.1
plant outgrowth control	Plant outgrowth control	-0.0	-0.1	-0.3	+0.0	-3.7
carbon source	L-Rhamnose (C)	-0.2	-0.0	-0.3	-1.2	-2.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.6	+0.1	-1.8	-0.2	-1.2
phage	Burk1_100	-0.1	-0.8	-0.0	-1.4	-1.4
soil extract	D,L-Malic Acid 5 mM in soil extract	+0.5	-0.3	-0.5	+0.4	-3.8
plant outgrowth control	Plant outgrowth control	-1.6	-0.3	-0.5	-1.7	+0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.9	+0.3	+0.2	-1.7	-1.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.0	+0.1	-0.5	-0.7	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.1	-1.0	-1.7	-0.8
mixed community	Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia	-0.0	-0.2	-0.9	+0.2	-2.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.6	-0.5	-1.2	-1.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	-1.3	-0.4	+0.8	-2.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.3	-0.7	+0.9	-3.1
stress	RCH2_defined_glucose_5mM with Chlorogenic 1 mM	+0.2	-0.1	+0.9	-0.8	-3.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	+0.3	+0.3	-0.9	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.0	+0.5	-1.3	-1.8
phage	Burk2_10	-0.9	-0.7	-0.5	+1.1	-1.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	+0.4	-0.4	+1.2	-1.9
carbon source	D-Lactate (C)	+0.5	-1.1	-1.1	-0.8	+0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	+0.4	-1.3	-0.3	+0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+1.1	+0.0	-0.6	-0.6	-1.7
stress	R2A with Isopropyl alcohol 21 g/L	+1.0	-0.5	+0.4	-0.3	-2.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	+0.3	-1.2	-1.5	+0.1