Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006259 and ABIE53_006260 are separated by 66 nucleotidesABIE53_006260 and ABIE53_006261 are separated by 158 nucleotidesABIE53_006261 and ABIE53_006262 are separated by 60 nucleotidesABIE53_006262 and ABIE53_006263 overlap by 14 nucleotides ABIE53_006259: ABIE53_006259 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 2,626,871 to 2,627,617 _006259 ABIE53_006260: ABIE53_006260 - DNA-binding transcriptional LysR family regulator, at 2,627,684 to 2,628,637 _006260 ABIE53_006261: ABIE53_006261 - putative spermidine/putrescine transport system substrate-binding protein, at 2,628,796 to 2,629,854 _006261 ABIE53_006262: ABIE53_006262 - putative spermidine/putrescine transport system ATP-binding protein, at 2,629,915 to 2,630,994 _006262 ABIE53_006263: ABIE53_006263 - putative spermidine/putrescine transport system permease protein, at 2,630,981 to 2,631,853 _006263
Group Condition ABIE53_006259 ABIE53_006260 ABIE53_006261 ABIE53_006262 ABIE53_006263
stress R2A with Chloride 200 mM -0.3 -0.8 -0.4 -1.1 -0.5
nitrogen source histamine 2mM N source -0.5 +0.2 -0.1 -2.9 +0.3
stress R2A with Chloride 200 mM +0.3 -0.7 +0.2 -2.0 +0.2
stress RCH2_defined_glucose_5mM with Salicylic 5 mM +0.1 -0.3 +0.1 -1.9 +0.3
soil extract Indole-3-pyruvic 5 mM in soil extract -0.1 -0.6 +0.5 -1.6 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.5 -1.0 +0.3 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.9 +0.5 -1.0 -0.6
carbon source D-Fructose (C) +0.8 -0.5 +0.5 -0.7 -0.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.6 +0.2 +0.7 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.5 +0.6 -0.7 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.7 +1.1 -1.0 +0.4
carbon source D-Mannose (C) +0.9 -0.5 +0.7 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +1.2 +0.8 -0.6 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.0 +0.6 -0.2 +0.9
plant outgrowth control Plant outgrowth control +0.4 +0.5 -0.2 +1.5 +0.3
r2a outgrowth control R2A outgrowth control -0.1 +0.7 +0.2 +1.3 +0.5
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 -0.6 +0.7 +1.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +1.1 +0.5 +0.3 +0.5
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 +0.3 +1.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.5 +0.5 +0.9 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.4 +0.5 +1.8 +0.6
plant outgrowth control Plant outgrowth control +0.5 +0.5 +0.1 +1.2 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.1 +0.7 +0.9 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.7 +0.2 +1.8 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.0 +1.1 +1.7 +0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.7 +0.2 +1.5 +1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +1.5 +0.6 +1.6 +0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +1.7 +1.5 +2.1 +1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.5 +1.8 +1.7 +1.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.9 +1.9 +1.8 +2.2
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