Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_006247	ABIE53_006248	ABIE53_006249	ABIE53_006250	ABIE53_006251
stress	RCH2_defined_glucose_5mM with L-Proline 5 mM	-2.9	-2.5	-0.1	+0.0	+0.1
stress	RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM	-3.9	-0.8	+0.1	+0.2	-0.3
carbon source	butyrate (C)	-1.2	-2.4	-0.5	-0.4	+0.1
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.9	-1.8	-0.6	+0.2	-0.0
soil extract	Sucrose 5 mM in soil extract	-0.7	-2.7	-0.3	-0.3	-0.1
stress	R2A with Isopropyl alcohol 21 g/L	-1.7	-2.3	+0.1	+0.2	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.9	-1.6	+0.3	-0.1	+0.4
carbon source	m-Inositol (C)	-2.5	+0.4	-0.6	-0.5	-0.5
stress	M9 with Chloride 200 mM	-2.3	-1.6	-0.2	+0.2	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-2.5	-1.4	+0.1	-0.2	+0.4
soil extract	Chlorogenic 5 mM in soil extract	-2.3	-1.8	+0.5	+0.2	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.8	-1.8	-0.5	+0.4	-0.7
stress	RCH2_defined_glucose_5mM with caffeic 0.5 mM	+1.1	-2.0	+0.2	+0.1	-0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+1.0	-2.0	-1.4	+0.3	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.4	+1.9	-0.9	+0.1	-0.1
r2a outgrowth control	R2A outgrowth control	-0.4	+2.1	-1.4	-0.3	-0.1
plant outgrowth control	Plant outgrowth control	-1.0	+1.5	+0.0	+0.6	-1.0
plant outgrowth control	Plant outgrowth control	-1.6	+1.8	+0.4	+0.3	-0.3
carbon source	Tween 20 (C)	+2.0	+0.9	-0.2	-0.8	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	+1.9	-0.1	+0.6	-1.0
carbon source	D-Serine (C)	-1.6	+4.5	-0.1	-0.1	-0.1
carbon source	Shikimic Acid 5 mM (C)	+1.9	+2.1	-1.2	-0.1	+0.2
plant outgrowth control	Plant outgrowth control	-0.2	+3.3	+0.4	-0.2	-0.1
carbon source	Laminarin 10 g/L (C)	+1.6	+2.2	-0.9	+0.2	+0.2
stress	R2A with Tricalcium phosphate 0.5 g/L	+2.1	+2.0	-0.5	-0.2	-0.0
carbon source	Acetylated xylan 10 g/L (C)	+2.4	+1.9	-0.7	+0.1	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	+2.9	-0.2	+0.5	+0.6
plant outgrowth control	Plant outgrowth control	+1.1	+2.5	+0.5	-0.2	+0.1
carbon source	Shikimic Acid 5 mM (C)	+2.7	+2.7	-0.3	-0.0	-0.1
plant outgrowth control	Plant outgrowth control	+0.6	+3.8	+0.2	-0.0	+0.4