Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006173 and ABIE53_006174 are separated by 601 nucleotidesABIE53_006174 and ABIE53_006175 overlap by 14 nucleotidesABIE53_006175 and ABIE53_006176 overlap by 1 nucleotidesABIE53_006176 and ABIE53_006579 are separated by 101 nucleotides ABIE53_006173: ABIE53_006173 - NADH-quinone oxidoreductase subunit M, at 2,522,532 to 2,524,085 _006173 ABIE53_006174: ABIE53_006174 - putative ABC transport system ATP-binding protein, at 2,524,687 to 2,525,436 _006174 ABIE53_006175: ABIE53_006175 - putative ABC transport system permease protein, at 2,525,423 to 2,527,996 _006175 ABIE53_006176: ABIE53_006176 - putative secreted hydrolase, at 2,527,996 to 2,529,207 _006176 ABIE53_006579: ABIE53_006579 - 5S ribosomal RNA, at 2,529,309 to 2,529,422 _006579
Group Condition ABIE53_006173 ABIE53_006174 ABIE53_006175 ABIE53_006176 ABIE53_006579
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -1.8 -0.7 -1.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.6 -1.4 -0.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.5 -0.7 -1.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -2.0 -0.2 -0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 -0.7 -1.3 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.2 -0.4 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.4 -0.6 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -1.1 -0.7 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -1.4 -0.3 -0.3 N.D.
plant outgrowth control Plant outgrowth control -0.1 -1.7 -0.1 -0.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.4 -0.4 -0.7 N.D.
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.0 -1.0 -0.2 -0.7 N.D.
plant outgrowth control Plant outgrowth control -0.4 -0.4 -0.1 -1.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.7 -0.4 -0.2 N.D.
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.1 -1.0 +0.0 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.1 -0.0 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.0 +0.2 -0.5 N.D.
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.1 -1.1 +0.0 -0.5 N.D.
plant outgrowth control Plant outgrowth control -0.2 -1.1 -0.4 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.3 -0.3 +0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.5 -0.2 -0.5 N.D.
carbon source Acetylated xylan 10 g/L (C) +0.1 +0.1 +0.4 -1.2 N.D.
carbon source Shikimic Acid 5 mM (C) -0.5 +0.7 +0.0 -0.8 N.D.
carbon source Laminarin 10 g/L (C) +0.1 +0.5 -0.4 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.0 -1.1 -0.2 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 +1.3 -0.8 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.8 -0.2 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.5 -0.2 -0.7 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +1.0 +0.2 -0.6 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.2 +1.0 +0.2 -0.8 N.D.
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ABIE53_006173
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ABIE53_006174
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ABIE53_006176
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ABIE53_006579
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