Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006168 and ABIE53_006169 are separated by 404 nucleotidesABIE53_006169 and ABIE53_006170 are separated by 100 nucleotidesABIE53_006170 and ABIE53_006171 are separated by 75 nucleotidesABIE53_006171 and ABIE53_006172 are separated by 6 nucleotides ABIE53_006168: ABIE53_006168 - short-subunit dehydrogenase, at 2,516,386 to 2,517,402 _006168 ABIE53_006169: ABIE53_006169 - phospholipase C, at 2,517,807 to 2,519,600 _006169 ABIE53_006170: ABIE53_006170 - cytochrome c peroxidase, at 2,519,701 to 2,521,209 _006170 ABIE53_006171: ABIE53_006171 - HAD superfamily hydrolase (TIGR01509 family), at 2,521,285 to 2,521,974 _006171 ABIE53_006172: ABIE53_006172 - AhpD family alkylhydroperoxidase, at 2,521,981 to 2,522,373 _006172
Group Condition ABIE53_006168 ABIE53_006169 ABIE53_006170 ABIE53_006171 ABIE53_006172
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.0 -0.2 -0.7 -2.0
carbon source Shikimic Acid 5 mM (C) -0.0 +0.5 -0.7 -0.5 -2.5
stress R2A with Tricalcium phosphate 0.5 g/L -0.0 +0.1 -0.6 -1.0 -1.6
plant outgrowth control Plant outgrowth control -0.4 -0.0 -1.0 -1.3 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.1 -1.6 -2.1
carbon source Acetylated xylan 10 g/L (C) -0.2 +0.3 -0.2 -0.5 -2.2
carbon source Acetylated xylan 10 g/L (C) -0.7 +0.2 -0.7 -0.5 -1.1
carbon source Laminarin 10 g/L (C) -0.2 +0.7 -0.7 -0.6 -1.6
stress R2A with Tricalcium phosphate 0.5 g/L -0.3 +0.2 -0.8 -1.0 -0.4
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.4 -0.0 +0.3 -0.5 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -0.5 +0.7 -0.2 -1.3
stress M9 with Chloride 200 mM +0.0 +0.1 +0.6 -1.2 -1.3
motility_chemotaxis Motility_chemotaxis, R2A; inner cut -0.0 -0.2 +0.4 -0.3 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.3 -0.8 -0.9 -0.6
carbon source Shikimic Acid 5 mM (C) +0.1 +0.5 -0.9 +0.2 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.0 -0.2 -1.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.6 +0.5 -0.2 -1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.7 -0.6 +0.1 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.5 -0.6 -0.6 -0.9
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.9 +0.3 -0.8 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -0.0 +0.4 -1.5 +0.9
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 +0.3 +0.3 -0.3 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.5 -1.2 +0.6 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.2 +0.2 +0.4 +1.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 +0.8 +0.2 -1.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 +0.6 +0.3 -1.1 +0.8
carbon source D-Fructose (C) +0.7 +0.6 -0.0 +1.0 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 -0.1 -0.2 +0.9 +1.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.2 +0.0 +0.9 +0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 +0.5 +0.7 +0.6 +0.7
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