Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006158 and ABIE53_006159 are separated by 44 nucleotidesABIE53_006159 and ABIE53_006160 are separated by 66 nucleotidesABIE53_006160 and ABIE53_006161 are separated by 338 nucleotidesABIE53_006161 and ABIE53_006162 are separated by 116 nucleotides ABIE53_006158: ABIE53_006158 - sarcosine oxidase subunit delta, at 2,505,891 to 2,506,205 _006158 ABIE53_006159: ABIE53_006159 - sarcosine oxidase subunit beta, at 2,506,250 to 2,507,494 _006159 ABIE53_006160: ABIE53_006160 - L-serine dehydratase, at 2,507,561 to 2,508,955 _006160 ABIE53_006161: ABIE53_006161 - transcriptional regulator GlxA family with amidase domain, at 2,509,294 to 2,510,376 _006161 ABIE53_006162: ABIE53_006162 - glycine betaine/proline transport system substrate-binding protein, at 2,510,493 to 2,511,437 _006162
Group Condition ABIE53_006158 ABIE53_006159 ABIE53_006160 ABIE53_006161 ABIE53_006162
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.5 -0.4 -2.6 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.6 -0.3 -2.4 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.3 -0.4 -1.1 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.5 +0.6 -2.4 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.1 -0.5 -1.0 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -2.4 -1.0 -0.7 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.9 -0.3 -2.0 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.8 -0.7 -0.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -2.6 -0.2 -0.3 -0.1
carbon source L-Proline (C) N.D. -0.0 -0.9 -1.5 -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.7 -0.6 -1.5 +0.0
carbon source D-Mannose (C) N.D. -0.5 -1.2 -1.3 +0.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 -0.3 -1.3 -0.9
carbon source Acetylated xylan 10 g/L (C) N.D. -1.9 +0.2 -0.9 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.6 -0.8 +0.1 -0.4
carbon source D-Sorbitol (C) N.D. -0.2 -0.6 -2.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.8 -0.2 -2.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.3 -0.1 -1.3 +0.7
carbon source D-Gluconic Acid (C) N.D. -0.7 -0.6 -1.1 +0.5
stress R2A with Propan-1-ol 13 g/L N.D. -0.4 -0.8 -1.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.9 +0.8 -1.0 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.4 +0.2 -1.0 +0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 +0.2 -1.7 +0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.5 -0.4 +1.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.5 -0.6 +0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.1 -0.9 +0.1 +0.9
stress Growth in presence of pinene N.D. +0.6 -0.4 +0.7 -1.3
carbon source Acetylated xylan 10 g/L (C) N.D. +0.5 -0.7 -0.7 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 -0.7 +1.6 -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 -0.0 +2.2 +1.2
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