Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006120 and ABIE53_006121 are separated by 147 nucleotidesABIE53_006121 and ABIE53_006122 are separated by 42 nucleotidesABIE53_006122 and ABIE53_006123 are separated by 372 nucleotidesABIE53_006123 and ABIE53_006124 are separated by 78 nucleotides ABIE53_006120: ABIE53_006120 - CBS domain-containing protein, at 2,460,002 to 2,460,691 _006120 ABIE53_006121: ABIE53_006121 - alcohol dehydrogenase, at 2,460,839 to 2,461,879 _006121 ABIE53_006122: ABIE53_006122 - nucleotide-binding universal stress UspA family protein, at 2,461,922 to 2,462,395 _006122 ABIE53_006123: ABIE53_006123 - hypothetical protein, at 2,462,768 to 2,463,064 _006123 ABIE53_006124: ABIE53_006124 - outer membrane protein OmpU, at 2,463,143 to 2,464,291 _006124
Group Condition ABIE53_006120 ABIE53_006121 ABIE53_006122 ABIE53_006123 ABIE53_006124
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.8 -0.9 -3.0 -0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 +0.6 -1.1 -3.0 -0.8
stress M9 with Chloride 200 mM -0.6 -0.9 -0.4 -2.9 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.9 -3.0 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -0.5 -1.2 -1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.0 +0.6 -3.3 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.5 -1.9 -1.0 -0.3
r2a outgrowth control R2A outgrowth control +0.4 -0.5 -2.4 -0.1 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.5 -0.0 -0.4 -1.3 +0.3
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM -0.5 -0.8 -1.7 -0.2 +0.3
stress M9 with Chloride 200 mM -0.1 -0.7 -2.7 +0.6 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.4 -0.5 -1.9 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.2 -1.9 -0.8 +0.3
stress M9 with 3-methyl-3-butenol 4.5 g/L -0.3 +0.4 -0.6 -2.4 +0.2
soil extract Indole-3-pyruvic 5 mM in soil extract -0.5 +0.1 -1.8 +0.3 -0.6
carbon source Shikimic Acid 5 mM (C) +0.1 +0.4 -0.3 -1.9 -0.7
stress M9 with Ethanol 2.5 vol% -0.2 +0.4 -0.3 -2.1 -0.3
biofilm biofilm; planktonic cells from 96 well plate assay in R2A -0.5 -0.2 -1.8 +0.5 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.8 +1.2 -2.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.5 -1.1 -0.3 +0.3
stress R2A with Tricalcium phosphate 0.5 g/L -0.1 +0.4 +0.7 -2.3 -0.7
carbon source 2,3-dihydroxybenzoic and Ethanols -0.4 +0.2 +0.6 -1.5 -0.5
r2a outgrowth control R2A outgrowth control +0.8 -0.9 -0.4 -0.9 +0.2
carbon source Shikimic Acid 5 mM (C) +0.2 +0.5 +0.2 -1.1 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.0 +0.7 -2.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 -0.4 -1.3 +1.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 -1.4 -1.2 +1.9 +0.1
r2a outgrowth control R2A outgrowth control +0.4 -0.7 +0.8 -1.0 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.4 +0.3 +1.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 +0.6 +0.3 +1.0 +0.0
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