Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006103 and ABIE53_006104 are separated by 61 nucleotidesABIE53_006104 and ABIE53_006105 are separated by 317 nucleotidesABIE53_006105 and ABIE53_006106 are separated by 191 nucleotidesABIE53_006106 and ABIE53_006107 are separated by 42 nucleotides ABIE53_006103: ABIE53_006103 - hypothetical protein, at 2,442,448 to 2,443,389 _006103 ABIE53_006104: ABIE53_006104 - hypothetical protein, at 2,443,451 to 2,444,680 _006104 ABIE53_006105: ABIE53_006105 - SET domain-containing protein, at 2,444,998 to 2,445,435 _006105 ABIE53_006106: ABIE53_006106 - hypothetical protein, at 2,445,627 to 2,445,830 _006106 ABIE53_006107: ABIE53_006107 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 2,445,873 to 2,446,055 _006107
Group Condition ABIE53_006103 ABIE53_006104 ABIE53_006105 ABIE53_006106 ABIE53_006107
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -1.3 N.D. N.D.
carbon source Laminarin 10 g/L (C) -0.2 -1.2 -0.5 N.D. N.D.
plant outgrowth control Plant outgrowth control -0.6 -0.4 -0.5 N.D. N.D.
stress R2A with Propan-1-ol 13 g/L +0.2 -0.8 -0.7 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.2 +0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 -0.1 -1.6 N.D. N.D.
r2a outgrowth control R2A outgrowth control +0.3 -0.9 -0.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.3 -1.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.6 -0.5 N.D. N.D.
plant outgrowth control Plant outgrowth control -0.8 +0.3 -0.3 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.3 +0.4 N.D. N.D.
stress M9 with Propan-1-ol 13 g/L -0.4 -0.7 +0.4 N.D. N.D.
carbon source L-Proline (C) -0.4 -0.7 +0.5 N.D. N.D.
carbon source 2,3-dihydroxybenzoic and Ethanols -0.3 -0.8 +0.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +0.7 -0.7 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.4 -0.9 N.D. N.D.
carbon source Acetylated xylan 10 g/L (C) -0.3 -0.7 +0.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.9 +0.2 N.D. N.D.
carbon source L-Rhamnose (C) +0.0 -0.8 +0.7 N.D. N.D.
carbon source D-Fructose (C) -0.4 -0.2 +0.8 N.D. N.D.
stress R2A with Tricalcium phosphate 0.5 g/L -0.1 -0.7 +0.9 N.D. N.D.
carbon source Laminarin 10 g/L (C) +0.2 -0.5 +0.9 N.D. N.D.
carbon source L-Glutamic (C) +0.1 -0.4 +1.0 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -0.3 +1.1 N.D. N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +0.7 -0.4 +0.6 N.D. N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract +0.4 +0.8 -0.2 N.D. N.D.
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.5 +0.5 +0.4 N.D. N.D.
stress R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM +0.2 +0.0 +1.1 N.D. N.D.
nitrogen source Ammonium chloride 30 mM (N) +0.4 +0.2 +0.8 N.D. N.D.
r2a no shaking R2A no shaking +0.5 +0.3 +0.8 N.D. N.D.
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