Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006074 and ABIE53_006075 are separated by 13 nucleotidesABIE53_006075 and ABIE53_006076 are separated by 117 nucleotidesABIE53_006076 and ABIE53_006077 are separated by 122 nucleotidesABIE53_006077 and ABIE53_006078 are separated by 892 nucleotides ABIE53_006074: ABIE53_006074 - hypothetical protein, at 2,406,649 to 2,407,371 _006074 ABIE53_006075: ABIE53_006075 - crotonobetainyl-CoA:carnitine CoA-transferase CaiB-like acyl-CoA transferase, at 2,407,385 to 2,407,987 _006075 ABIE53_006076: ABIE53_006076 - ACS family tartrate transporter-like MFS transporter, at 2,408,105 to 2,409,412 _006076 ABIE53_006077: ABIE53_006077 - L-fuconolactonase, at 2,409,535 to 2,410,551 _006077 ABIE53_006078: ABIE53_006078 - glycosyltransferase involved in cell wall biosynthesis, at 2,411,444 to 2,412,805 _006078
Group Condition ABIE53_006074 ABIE53_006075 ABIE53_006076 ABIE53_006077 ABIE53_006078
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.5 -0.6 -1.7 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.0 -0.6 -1.3 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.8 -1.3 -1.0 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.2 +0.1 -1.8 -1.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.2 -1.4 -0.9 -1.4
plant outgrowth control Plant outgrowth control -0.2 -0.1 -1.0 -0.9 -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.3 -0.0 -1.9 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.1 -0.2 -1.6 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 -0.1 -1.8 -1.5
carbon source Laminarin 10 g/L (C) +0.2 -1.0 -1.6 -0.9 -0.2
stress R2A with Chloride 200 mM -0.7 -1.4 -0.1 -0.5 -0.7
carbon source Ferulic Acid and Ethanols +0.1 -0.7 -0.6 -1.1 -1.0
r2a outgrowth control R2A outgrowth control +0.0 -0.8 -0.6 -0.5 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.9 +0.2 -1.1 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.0 -0.6 -1.2 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -2.0 -0.2 -0.6 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 -0.7 -0.8 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.7 -0.9 -0.7 -1.6
r2a outgrowth control R2A outgrowth control +0.2 +0.4 -0.8 -1.2 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.1 -0.5 -0.9 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -1.1 +1.0 -0.6 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.8 +0.5 -0.4 -1.0
m9 no stress control M9 no stress control -0.0 +0.0 +0.5 +1.9 +0.9
stress M9 with 3-methyl-2-butenol 2 g/L -0.0 -0.3 +0.6 +1.6 +1.6
stress M9 with 3-methyl-2-butenol 2 g/L -0.2 -0.4 +0.8 +1.8 +1.5
stress M9 with 3-methyl-2-butenol 2 g/L -0.2 +0.1 +0.8 +1.7 +1.4
m9 no stress control M9 no stress control -0.2 +0.9 +0.3 +1.7 +1.2
m9 no stress control M9 no stress control +0.1 +0.3 +0.7 +1.6 +1.3
m9 no stress control M9 no stress control -0.1 +0.4 +0.5 +1.8 +1.5
stress M9 with 3-methyl-2-butenol 2 g/L +0.1 +0.4 +0.9 +1.8 +1.8
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