Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006047 and ABIE53_006048 overlap by 59 nucleotidesABIE53_006048 and ABIE53_006049 are separated by 54 nucleotidesABIE53_006049 and ABIE53_006050 are separated by 184 nucleotidesABIE53_006050 and ABIE53_006051 overlap by 50 nucleotides ABIE53_006047: ABIE53_006047 - type III secretion protein N (ATPase), at 2,371,518 to 2,372,912 _006047 ABIE53_006048: ABIE53_006048 - type III secretion system HrpB7-like protein, at 2,372,854 to 2,373,456 _006048 ABIE53_006049: ABIE53_006049 - type III secretion protein T, at 2,373,511 to 2,374,326 _006049 ABIE53_006050: ABIE53_006050 - type II secretory pathway component GspD/PulD (secretin), at 2,374,511 to 2,375,434 _006050 ABIE53_006051: ABIE53_006051 - type III secretion system YscC/HrcC family outer membrane pore protein, at 2,375,385 to 2,376,341 _006051
Group Condition ABIE53_006047 ABIE53_006048 ABIE53_006049 ABIE53_006050 ABIE53_006051
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 N.D. N.D. -1.0 -0.2
stress R2A with Propan-1-ol 13 g/L -0.9 N.D. N.D. -1.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 N.D. N.D. +0.2 +0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 N.D. N.D. -0.7 +0.5
stress R2A with 3-methyl-3-butenol 4.5 g/L -1.9 N.D. N.D. +0.6 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.9 N.D. N.D. -1.2 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 N.D. N.D. -1.7 +0.2
stress R2A with Chloride 200 mM +1.0 N.D. N.D. -0.9 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 N.D. N.D. -0.9 +0.0
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.2 N.D. N.D. +0.8 +0.7
stress RCH2_defined_glucose_5mM with Adenine 4 mM +1.3 N.D. N.D. -0.0 -0.9
carbon source D-Sorbitol (C) +1.5 N.D. N.D. -0.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 N.D. N.D. +0.6 -0.7
carbon source D-Glucuronic Acid (C) +0.9 N.D. N.D. +0.7 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 N.D. N.D. +1.0 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 N.D. N.D. +0.3 -0.5
carbon source D,L-Malic Acid (C) +0.9 N.D. N.D. +0.7 -0.7
carbon source L-Histidine (C) +1.3 N.D. N.D. +0.6 -1.0
carbon source D-Glucose (C) +1.4 N.D. N.D. +0.3 -0.5
carbon source Tween 20 (C) +1.4 N.D. N.D. +0.3 -0.4
carbon source D-Galacturonic Acid (C) +1.3 N.D. N.D. +0.5 -0.3
carbon source D-Glucose-6-Phosphate (C) +1.5 N.D. N.D. +0.5 -0.4
carbon source D-Galactose (C) +1.2 N.D. N.D. +0.8 -0.3
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +1.1 N.D. N.D. +0.2 +0.6
carbon source D-Fructose (C) +1.7 N.D. N.D. +0.7 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 N.D. N.D. +1.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.9 N.D. N.D. +0.7 +0.5
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +1.5 N.D. N.D. +0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.6 N.D. N.D. +0.7 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.7 N.D. N.D. +0.9 +0.3
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