Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_006042	ABIE53_006043	ABIE53_006044	ABIE53_006045	ABIE53_006046
plant outgrowth control	Plant outgrowth control	-0.2	N.D.	-2.8	-0.4	-3.8
carbon source	Acetylated xylan 10 g/L (C)	-2.9	N.D.	+0.0	-1.0	-1.6
carbon source	D,L-Malic Acid (C)	-0.5	N.D.	-1.5	-1.4	-0.4
soil extract	D,L-Malic Acid 5 mM in soil extract	-0.5	N.D.	-0.7	-0.6	-1.7
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.8	N.D.	-0.6	+0.1	-2.2
soil extract	caffeic 5 mM in soil extract	+0.3	N.D.	-0.5	-0.7	-2.3
carbon source	Acetylated xylan 10 g/L (C)	-1.5	N.D.	-1.4	+0.4	-0.1
soil extract	Serotonin 5 mM in soil extract	-0.0	N.D.	+0.4	-1.3	-1.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.3	N.D.	-0.1	-0.8	-1.9
stress	R2A with Chloride 200 mM	+0.5	N.D.	-0.0	-2.2	-0.6
r2a no shaking	R2A no shaking	-0.5	N.D.	-0.1	+0.4	-2.2
stress	RCH2_defined_glucose_5mM with Chlorogenic 0.5 mM	+0.3	N.D.	-1.5	-1.2	+0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	N.D.	-0.3	-1.4	-1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	N.D.	+0.6	-0.7	-1.5
stress	R2A with Chloride 200 mM	-0.0	N.D.	+0.6	-0.5	-2.0
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.6	N.D.	+0.1	+1.1	-2.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.1	N.D.	-0.0	+0.8	-1.3
stress	M9 with Chloride 200 mM	+0.4	N.D.	+0.5	-0.6	-2.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.5	N.D.	-1.1	-2.2	+1.3
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-0.5	N.D.	-0.9	+1.1	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	N.D.	+1.2	-0.5	-1.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	N.D.	-1.6	+1.0	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	N.D.	-1.0	-0.2	+1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.1	N.D.	-0.8	-1.2	+2.6
carbon source	L-Histidine (C)	-0.5	N.D.	-1.2	+1.0	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.5	N.D.	-0.6	-1.1	+2.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	N.D.	-1.2	+1.1	+1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	N.D.	-1.0	+0.7	+1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	N.D.	+1.6	+1.6	-0.8
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	N.D.	+0.7	-0.3	+2.9