Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_006038	ABIE53_006039	ABIE53_006040	ABIE53_006041	ABIE53_006042
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.5	-1.2	-0.5	-1.0	-0.6
carbon source	butyrate (C)	-0.3	-0.9	+0.4	-2.0	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-2.9	-0.1	+0.3	-0.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.1	+1.8	-0.4	-2.8	-1.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.1	-3.4	+0.4	+0.5	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.1	-1.4	-0.7	+0.9	+0.1
stress	R2A with Chloride 200 mM	-0.7	-1.9	+0.3	-0.2	+0.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.1	+0.8	+0.1	-0.8	-0.8
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	+0.2	+0.9	+0.2	-1.7	-0.6
carbon source	Acetylated xylan 10 g/L (C)	+1.8	+1.1	-0.2	-1.7	-1.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.4	+0.3	+1.2	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	+1.1	-0.5	-1.0	-0.9
carbon source	Acetylated xylan 10 g/L (C)	+1.3	+1.3	-0.8	+0.7	-2.9
carbon source	D-Fructose (C)	-1.4	+2.4	-0.4	-0.4	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-1.9	+0.5	+0.2	+0.7
carbon source	L-Proline (C)	-0.1	+1.8	-0.3	-0.5	-0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.8	-0.8	+0.1	+1.5	+0.4
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	-0.7	+0.8	+1.4	-0.5
carbon source	D-Galactose (C)	-0.9	+1.7	+0.1	-0.7	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+1.0	+0.5	-0.7	-0.7
stress	R2A with Tricalcium phosphate 0.5 g/L	+0.6	+1.5	-0.5	+0.2	-1.2
carbon source	L-Histidine (C)	+0.1	+2.5	-0.7	-0.2	-0.5
carbon source	D-Glucose (C)	+0.0	+2.5	-0.4	-0.3	-0.4
carbon source	Shikimic Acid 5 mM (C)	+0.9	+1.8	-0.4	-0.4	-0.4
carbon source	D-Glucose-6-Phosphate (C)	-0.1	+2.2	-0.4	+0.5	-0.3
carbon source	Laminarin 10 g/L (C)	+0.9	+0.8	-0.4	+1.4	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.5	+1.9	+0.5	-0.9	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+2.1	+0.6	+0.3	+0.1
carbon source	D-Mannose (C)	-0.2	+2.2	+0.1	+0.9	-0.3
plant outgrowth control	Plant outgrowth control	+0.8	+2.6	+0.7	+0.1	-1.0