Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006017 and ABIE53_006018 are separated by 153 nucleotidesABIE53_006018 and ABIE53_006019 overlap by 4 nucleotidesABIE53_006019 and ABIE53_006020 are separated by 318 nucleotidesABIE53_006020 and ABIE53_006021 are separated by 63 nucleotides ABIE53_006017: ABIE53_006017 - hypothetical protein, at 2,340,305 to 2,340,625 _006017 ABIE53_006018: ABIE53_006018 - endonuclease/exonuclease/phosphatase family metal-dependent hydrolase, at 2,340,779 to 2,341,555 _006018 ABIE53_006019: ABIE53_006019 - phospholipase D1/2, at 2,341,552 to 2,343,762 _006019 ABIE53_006020: ABIE53_006020 - aldose 1-epimerase, at 2,344,081 to 2,345,346 _006020 ABIE53_006021: ABIE53_006021 - hypothetical protein, at 2,345,410 to 2,345,643 _006021
Group Condition ABIE53_006017 ABIE53_006018 ABIE53_006019 ABIE53_006020 ABIE53_006021
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.4 -0.6 -0.3 +0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.6 +0.1 -0.2 -0.2 N.D.
stress M9 with Propan-1-ol 13 g/L -1.6 -0.2 -0.1 +0.1 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L -1.3 -0.0 -0.3 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 -0.1 +0.1 +0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.4 +0.2 -0.0 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 +0.3 +0.1 -0.3 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM -1.4 +0.3 -0.0 +0.1 N.D.
carbon source D-Lactate (C) -1.4 +0.1 +0.2 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -0.4 -0.6 +0.8 N.D.
plant outgrowth control Plant outgrowth control -1.5 +0.3 +0.1 +0.3 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.7 +0.4 +0.3 -0.1 N.D.
r2a outgrowth control R2A outgrowth control -0.7 +0.5 +0.2 +0.2 N.D.
r2a outgrowth control R2A outgrowth control -0.7 +0.9 -0.1 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.7 +0.4 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.9 +0.4 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -0.8 +0.3 +0.4 N.D.
plant outgrowth control Plant outgrowth control +0.9 -0.5 +0.3 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -0.4 +0.1 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -0.4 +0.2 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -0.1 -0.1 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 -0.2 +0.5 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 +0.9 -0.1 -0.1 N.D.
r2a outgrowth control R2A outgrowth control +1.1 +0.1 +0.3 -0.1 N.D.
plant outgrowth control Plant outgrowth control +1.1 +0.0 +0.3 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.3 +0.2 +0.3 N.D.
plant outgrowth control Plant outgrowth control +0.9 +0.3 -0.0 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.4 +0.2 +0.2 +0.0 N.D.
stress Growth in presence of limonene +1.1 +0.6 +0.2 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +0.5 +0.2 +0.1 N.D.
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