Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006007 and ABIE53_006008 overlap by 8 nucleotidesABIE53_006008 and ABIE53_006009 are separated by 9 nucleotidesABIE53_006009 and ABIE53_006010 are separated by 301 nucleotidesABIE53_006010 and ABIE53_006011 are separated by 49 nucleotides ABIE53_006007: ABIE53_006007 - chemotaxis protein CheC, at 2,327,881 to 2,328,483 _006007 ABIE53_006008: ABIE53_006008 - two-component system chemotaxis response regulator CheY, at 2,328,476 to 2,328,844 _006008 ABIE53_006009: ABIE53_006009 - two-component system NtrC family sensor kinase, at 2,328,854 to 2,330,269 _006009 ABIE53_006010: ABIE53_006010 - ribose transport system substrate-binding protein, at 2,330,571 to 2,331,713 _006010 ABIE53_006011: ABIE53_006011 - two-component system NtrC family sensor kinase, at 2,331,763 to 2,333,520 _006011
Group Condition ABIE53_006007 ABIE53_006008 ABIE53_006009 ABIE53_006010 ABIE53_006011
carbon source Azelaic 20 mM (C) N.D. -4.2 -0.2 -0.5 -0.2
r2a outgrowth control R2A outgrowth control N.D. -3.1 -0.5 -0.6 -0.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. -3.2 -0.1 -0.9 -0.2
stress control RCH2_defined_glucose_5mM with no stress N.D. -3.5 -0.0 -0.3 -0.1
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM N.D. -3.9 -0.1 -0.1 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -2.7 +0.2 -0.6 -0.7
soil extract Adenine 5 mM in soil extract N.D. -3.2 -0.3 -0.3 -0.0
nitrogen source Ammonium chloride 30 mM (N) N.D. -3.8 -0.2 +0.2 +0.1
soil extract Adenine 5 mM in soil extract N.D. -3.3 -0.2 -0.2 +0.1
stress RCH2_defined_glucose_5mM with Guanine 5 mM N.D. -3.3 +0.2 -0.2 -0.1
soil extract Lumazine 5 mM in soil extract N.D. -3.6 -0.2 +0.3 -0.0
plant outgrowth control Plant outgrowth control N.D. -2.8 -0.1 +0.4 -0.9
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. -2.6 +0.1 -0.3 -0.6
soil extract Sucrose 5 mM in soil extract N.D. -2.4 +0.1 -0.9 -0.1
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. -3.2 +0.6 -0.1 -0.2
carbon source Cinnamic and Ethanols N.D. -2.8 -0.4 +0.6 -0.3
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. -2.6 -0.3 -0.3 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -2.6 -0.6 +0.5 -0.0
nitrogen source Ammonium chloride 0.5 mM (N) N.D. -2.4 -0.1 -0.6 +0.5
stress RCH2_defined_glucose_5mM with Sucrose 5 mM N.D. -2.8 -0.1 +0.3 +0.3
plant outgrowth control Plant outgrowth control N.D. -1.1 -0.7 +0.9 -0.9
plant outgrowth control Plant outgrowth control N.D. +1.3 -0.4 -1.0 -0.8
carbon source Acetylated xylan 10 g/L (C) N.D. +0.9 -1.7 +0.7 +0.7
carbon source Acetylated xylan 10 g/L (C) N.D. +0.5 -1.4 +1.3 +1.0
carbon source Laminarin 10 g/L (C) N.D. +2.1 -0.7 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +2.0 -0.8 +0.7 +0.1
carbon source Laminarin 10 g/L (C) N.D. +2.3 -0.5 +0.6 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +1.8 +0.6 +0.8 -0.7
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +3.7 +0.1 +0.8 -0.8
biofilm biofilm; planktonic cells from 96 well plate assay in R2A N.D. +2.7 +0.8 +0.1 +0.7
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