Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006003 and ABIE53_006004 are separated by 117 nucleotidesABIE53_006004 and ABIE53_006005 overlap by 1 nucleotidesABIE53_006005 and ABIE53_006006 are separated by 25 nucleotidesABIE53_006006 and ABIE53_006007 are separated by 63 nucleotides ABIE53_006003: ABIE53_006003 - uncharacterized protein YecE (DUF72 family), at 2,324,527 to 2,325,435 _006003 ABIE53_006004: ABIE53_006004 - hypothetical protein, at 2,325,553 to 2,325,861 _006004 ABIE53_006005: ABIE53_006005 - hypothetical protein, at 2,325,861 to 2,326,370 _006005 ABIE53_006006: ABIE53_006006 - adenylate cyclase, at 2,326,396 to 2,327,817 _006006 ABIE53_006007: ABIE53_006007 - chemotaxis protein CheC, at 2,327,881 to 2,328,483 _006007
Group Condition ABIE53_006003 ABIE53_006004 ABIE53_006005 ABIE53_006006 ABIE53_006007
carbon source Shikimic Acid 5 mM (C) -0.0 N.D. +0.5 -2.1 N.D.
carbon source L-Phenylalanine (C) -0.2 N.D. -0.6 -0.7 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 N.D. -0.4 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.9 -0.6 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract -0.5 N.D. -1.0 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 N.D. -0.1 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 N.D. -0.4 -0.2 N.D.
carbon source Shikimic Acid 5 mM (C) -0.2 N.D. +0.3 -1.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -1.2 -0.1 N.D.
nitrogen source histamine 2mM N source -0.8 N.D. +0.6 -0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. +0.3 -1.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 N.D. +0.8 -1.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 N.D. +0.4 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 N.D. -1.5 +0.2 N.D.
carbon source L-Proline (C) +0.3 N.D. +0.3 -0.8 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.0 N.D. +0.6 -0.8 N.D.
plant outgrowth control Plant outgrowth control +0.2 N.D. -0.7 +0.5 N.D.
r2a outgrowth control R2A outgrowth control +0.2 N.D. +0.6 -0.7 N.D.
carbon source D-Galacturonic Acid (C) +0.3 N.D. +0.4 -0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. -0.7 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. -0.6 +0.2 N.D.
carbon source L-Rhamnose (C) +0.2 N.D. +0.5 -0.6 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. -0.6 +0.3 N.D.
carbon source D-Glucuronic Acid (C) +0.4 N.D. +0.6 -0.5 N.D.
stress R2A with Chloride 200 mM +0.2 N.D. -0.4 +0.8 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. +1.0 -0.5 N.D.
motility_chemotaxis Motility_chemotaxis, R2A; inner cut +0.5 N.D. +0.6 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 N.D. +0.5 +0.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 N.D. +0.6 -0.3 N.D.
carbon source D-Mannose (C) +0.6 N.D. +0.6 +0.4 N.D.
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