Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006002 and ABIE53_006003 are separated by 19 nucleotidesABIE53_006003 and ABIE53_006004 are separated by 117 nucleotidesABIE53_006004 and ABIE53_006005 overlap by 1 nucleotidesABIE53_006005 and ABIE53_006006 are separated by 25 nucleotides ABIE53_006002: ABIE53_006002 - uracil-DNA glycosylase family protein, at 2,323,833 to 2,324,507 _006002 ABIE53_006003: ABIE53_006003 - uncharacterized protein YecE (DUF72 family), at 2,324,527 to 2,325,435 _006003 ABIE53_006004: ABIE53_006004 - hypothetical protein, at 2,325,553 to 2,325,861 _006004 ABIE53_006005: ABIE53_006005 - hypothetical protein, at 2,325,861 to 2,326,370 _006005 ABIE53_006006: ABIE53_006006 - adenylate cyclase, at 2,326,396 to 2,327,817 _006006
Group Condition ABIE53_006002 ABIE53_006003 ABIE53_006004 ABIE53_006005 ABIE53_006006
stress M9 with Chloride 200 mM -1.2 -0.2 N.D. -0.9 -0.2
carbon source Shikimic Acid 5 mM (C) -1.2 -0.2 N.D. +0.3 -1.1
carbon source Shikimic Acid 5 mM (C) -0.6 -0.0 N.D. +0.5 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.1 N.D. -0.7 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.3 N.D. +0.1 -0.6
stress Growth in presence of limonene -0.8 -0.2 N.D. +0.4 -0.7
carbon source Acetylated xylan 10 g/L (C) -1.0 -0.0 N.D. +0.6 -0.8
carbon source L-Phenylalanine (C) +0.5 -0.2 N.D. -0.6 -0.7
carbon source Acetylated xylan 10 g/L (C) -1.1 -0.0 N.D. +0.7 -0.5
nitrogen source histamine 2mM N source +0.1 -0.8 N.D. +0.6 -0.7
stress R2A with Isopropyl alcohol 21 g/L -1.0 +0.5 N.D. -0.4 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.6 +0.6 N.D. +0.6 -0.3
nitrogen source histamine 2mM N source -0.8 +0.2 N.D. +0.6 -0.5
r2a outgrowth control R2A outgrowth control -0.5 +0.2 N.D. +0.6 -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.2 N.D. +0.8 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.8 N.D. -1.5 +0.2
carbon source D-Glucuronic Acid (C) +0.8 +0.0 N.D. +0.5 -0.7
carbon source D-Galacturonic Acid (C) +0.8 +0.3 N.D. +0.4 -0.7
carbon source D-Glucose-6-Phosphate (C) +0.5 +0.1 N.D. +1.0 -0.5
carbon source D-Glucuronic Acid (C) +0.6 +0.4 N.D. +0.6 -0.5
carbon source L-Rhamnose (C) +0.9 +0.2 N.D. +0.5 -0.6
carbon source D-Galacturonic Acid (C) +0.8 +0.3 N.D. +0.6 -0.3
carbon source D-Gluconic Acid (C) +1.0 +0.2 N.D. +0.7 -0.4
stress Growth in presence of pinene +0.8 +0.5 N.D. +0.6 -0.2
carbon source D-Glucose (C) +1.0 +0.5 N.D. +0.4 -0.2
carbon source D-Fructose (C) +1.2 +0.3 N.D. +0.6 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.3 +0.4 N.D. -0.1 +0.2
carbon source L-Histidine (C) +1.0 +0.3 N.D. +0.8 -0.2
carbon source 4-Hydroxybenzoic Acid (C) +1.3 +0.5 N.D. -0.1 +0.3
carbon source D-Mannose (C) +1.0 +0.6 N.D. +0.6 +0.4
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