Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005998 and ABIE53_005999 are separated by 10 nucleotidesABIE53_005999 and ABIE53_006000 are separated by 92 nucleotidesABIE53_006000 and ABIE53_006001 are separated by 164 nucleotidesABIE53_006001 and ABIE53_006002 are separated by 245 nucleotides ABIE53_005998: ABIE53_005998 - uncharacterized protein YceH (UPF0502 family), at 2,320,664 to 2,321,365 _005998 ABIE53_005999: ABIE53_005999 - hypothetical protein, at 2,321,376 to 2,321,894 _005999 ABIE53_006000: ABIE53_006000 - alkylation response protein AidB-like acyl-CoA dehydrogenase, at 2,321,987 to 2,323,252 _006000 ABIE53_006001: ABIE53_006001 - hypothetical protein, at 2,323,417 to 2,323,587 _006001 ABIE53_006002: ABIE53_006002 - uracil-DNA glycosylase family protein, at 2,323,833 to 2,324,507 _006002
Group Condition ABIE53_005998 ABIE53_005999 ABIE53_006000 ABIE53_006001 ABIE53_006002
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 -0.3 N.D. -1.5
carbon source Shikimic Acid 5 mM (C) N.D. -1.0 -0.5 N.D. -0.6
carbon source Acetylated xylan 10 g/L (C) N.D. -0.6 -0.4 N.D. -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.6 -0.4 N.D. -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.8 -0.6 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.1 -0.2 N.D. -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.1 +0.1 N.D. -1.6
carbon source Shikimic Acid 5 mM (C) N.D. +0.4 -0.4 N.D. -1.2
soil extract caffeic 5 mM in soil extract N.D. +0.6 -0.5 N.D. -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.4 +0.1 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.1 +0.3 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.5 -0.2 N.D. +1.3
carbon source D-Glucose (C) N.D. -0.8 +0.4 N.D. +0.7
carbon source L-Glutamine (C) N.D. -0.6 +0.6 N.D. +0.5
carbon source D-Gluconic Acid (C) N.D. -0.7 +0.1 N.D. +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +1.1 -0.4 N.D. -0.2
carbon source L-Rhamnose (C) N.D. -0.6 +0.4 N.D. +0.9
carbon source m-Inositol (C) N.D. -0.5 +0.6 N.D. +0.6
carbon source Glucuronamide (C) N.D. -0.6 +0.9 N.D. +0.5
carbon source L-Proline (C) N.D. -0.4 +0.5 N.D. +0.7
carbon source D-Glucose-6-Phosphate (C) N.D. -0.5 +0.9 N.D. +0.5
carbon source D-Galacturonic Acid (C) N.D. -0.5 +0.6 N.D. +0.8
carbon source D-Glucose (C) N.D. -0.6 +0.7 N.D. +1.0
carbon source Tween 20 (C) N.D. -0.6 +0.6 N.D. +1.1
carbon source D-Fructose (C) N.D. -0.8 +0.8 N.D. +1.2
carbon source L-Histidine (C) N.D. -0.4 +0.7 N.D. +1.0
carbon source Tween 20 (C) N.D. -0.1 +0.9 N.D. +0.8
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.2 +0.1 N.D. +1.3
carbon source D-Mannose (C) N.D. +0.2 +0.5 N.D. +1.0
carbon source D-Sorbitol (C) N.D. -0.1 +0.6 N.D. +1.2
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