Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005995	ABIE53_005996	ABIE53_005997	ABIE53_005998	ABIE53_005999
stress	R2A with Isopropyl alcohol 21 g/L	-3.0	+0.0	-0.2	N.D.	-0.4
plant outgrowth control	Plant outgrowth control	-2.5	-0.2	+0.1	N.D.	-0.9
carbon source	Azelaic 20 mM (C)	-2.8	-0.3	-0.1	N.D.	-0.1
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	-2.0	-0.2	-0.8	N.D.	-0.1
carbon source	casaminos (C)	-2.8	-0.0	-0.1	N.D.	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-2.3	-0.1	-0.1	N.D.	-0.4
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-2.9	-0.2	-0.1	N.D.	+0.2
stress	M9 with Ethanol 2.5 vol%	-2.2	-0.0	-0.4	N.D.	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.5	+0.0	-0.4	N.D.	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.0	+0.2	-0.1	N.D.	-0.9
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-2.8	+0.1	-0.1	N.D.	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.5	-0.1	-0.3	N.D.	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.0	+0.2	+0.6	N.D.	-0.3
carbon source	Azelaic 20 mM (C)	-2.9	+0.0	-0.1	N.D.	+0.5
stress	R2A with Quartz_sand 500 g/L	-2.7	+0.1	-0.1	N.D.	+0.3
stress	RCH2_defined_glucose_5mM with Chlorogenic 0.5 mM	-2.8	-0.1	-0.0	N.D.	+0.5
stress	R2A with Propan-1-ol 13 g/L	-2.9	+0.1	+0.2	N.D.	+0.2
plant outgrowth control	Plant outgrowth control	-2.6	+0.1	+0.4	N.D.	-0.3
r2a no shaking	R2A no shaking	-2.9	+0.0	+0.1	N.D.	+0.7
carbon source	Cinnamic and Ethanols	-2.2	-0.1	-0.2	N.D.	+0.4
carbon source	Shikimic Acid 5 mM (C)	-1.1	-0.5	+0.5	N.D.	-1.0
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-2.5	-0.0	+0.3	N.D.	+0.3
carbon source	D-Sorbitol (C)	-1.9	-0.3	+0.7	N.D.	-0.1
carbon source	D-Galactose (C)	-2.2	-0.1	+0.7	N.D.	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.5	+0.2	+0.3	N.D.	+0.6
carbon source	D-Fructose (C)	-1.0	-0.2	+1.0	N.D.	-0.8
stress	Growth in presence of limonene	-1.8	+0.2	+0.1	N.D.	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+2.1	-0.4	+0.3	N.D.	-1.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+2.7	+0.3	-0.0	N.D.	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+2.3	+0.3	+0.2	N.D.	-0.2