Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005986 and ABIE53_005987 are separated by 129 nucleotidesABIE53_005987 and ABIE53_005988 are separated by 76 nucleotidesABIE53_005988 and ABIE53_005989 are separated by 22 nucleotidesABIE53_005989 and ABIE53_005990 are separated by 272 nucleotides ABIE53_005986: ABIE53_005986 - hypothetical protein, at 2,309,380 to 2,309,682 _005986 ABIE53_005987: ABIE53_005987 - fructose-bisphosphate aldolase class I, at 2,309,812 to 2,310,831 _005987 ABIE53_005988: ABIE53_005988 - secondary thiamine-phosphate synthase enzyme, at 2,310,908 to 2,311,327 _005988 ABIE53_005989: ABIE53_005989 - thioredoxin 1, at 2,311,350 to 2,311,670 _005989 ABIE53_005990: ABIE53_005990 - hypothetical protein, at 2,311,943 to 2,312,239 _005990
Group Condition ABIE53_005986 ABIE53_005987 ABIE53_005988 ABIE53_005989 ABIE53_005990
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -0.9 -0.1 -0.2 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.3 -0.4 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -0.2 -0.6 N.D. -0.7
stress M9 with Isopropyl alcohol 21 g/L -0.5 -0.4 -0.6 N.D. -0.2
soil extract Indole-3-pyruvic 5 mM in soil extract -0.7 -0.3 -0.4 N.D. +0.0
carbon source Glycerol (C) -0.5 -0.2 -0.4 N.D. -0.3
plant outgrowth control Plant outgrowth control -0.5 -0.2 -0.3 N.D. -0.5
carbon source L-Threonine (C) -0.4 -0.5 -0.1 N.D. -0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.6 -0.6 -0.2 N.D. -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.1 -0.1 N.D. -0.6
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.8 +0.3 -0.5 N.D. -0.2
stress R2A with Chloride 200 mM -1.0 +0.4 -0.2 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.1 -1.2 N.D. -0.2
carbon source Azelaic 20 mM (C) -0.4 +0.4 -0.3 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.3 +0.4 N.D. -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.2 -0.2 N.D. -0.8
stress RCH2_defined_glucose_5mM with Ferulic Acid 5 mM +0.7 -0.3 -0.2 N.D. -0.3
r2a outgrowth control R2A outgrowth control +0.8 -0.4 +0.1 N.D. -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.3 +0.6 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.6 +0.2 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.5 +0.5 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.1 -0.2 -0.1 N.D. -0.2
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound +0.7 +0.1 -0.2 N.D. +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 +0.4 -0.2 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.5 +0.4 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.7 +0.3 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.3 +0.2 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.3 +0.2 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.7 +0.4 N.D. -0.0
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.8 +0.4 +0.1 N.D. +0.1
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