Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005943 and ABIE53_005944 overlap by 2 nucleotidesABIE53_005944 and ABIE53_005945 are separated by 210 nucleotidesABIE53_005945 and ABIE53_005946 are separated by 2 nucleotidesABIE53_005946 and ABIE53_005947 are separated by 51 nucleotides ABIE53_005943: ABIE53_005943 - holin-like protein, at 2,266,562 to 2,267,083 _005943 ABIE53_005944: ABIE53_005944 - pimeloyl-ACP methyl ester carboxylesterase, at 2,267,082 to 2,268,236 _005944 ABIE53_005945: ABIE53_005945 - DNA-binding transcriptional ArsR family regulator, at 2,268,447 to 2,268,782 _005945 ABIE53_005946: ABIE53_005946 - uncharacterized protein YndB with AHSA1/START domain, at 2,268,785 to 2,269,231 _005946 ABIE53_005947: ABIE53_005947 - glutathione S-transferase, at 2,269,283 to 2,269,918 _005947
Group Condition ABIE53_005943 ABIE53_005944 ABIE53_005945 ABIE53_005946 ABIE53_005947
plant outgrowth control Plant outgrowth control -1.4 -0.5 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.2 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.9 N.D. N.D. N.D.
r2a outgrowth control R2A outgrowth control -1.0 -0.7 N.D. N.D. N.D.
stress R2A with Ethanol 2.5 vol% -1.3 -0.3 N.D. N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -0.7 N.D. N.D. N.D.
soil extract caffeic 5 mM in soil extract -0.8 -0.6 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 -0.8 N.D. N.D. N.D.
carbon source Glucuronamide (C) -1.0 -0.3 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.3 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.6 N.D. N.D. N.D.
carbon source butyrate (C) -1.0 -0.2 N.D. N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.4 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.1 N.D. N.D. N.D.
carbon source shik 20mM -1.0 +0.2 N.D. N.D. N.D.
carbon source butyrate (C) -0.9 +0.3 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.9 +0.4 N.D. N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.9 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Epiandrosterone 5 mM -0.8 +0.4 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.9 +0.5 N.D. N.D. N.D.
stress R2A with Chloride 200 mM -0.9 +0.5 N.D. N.D. N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 -0.9 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.8 +0.5 N.D. N.D. N.D.
carbon source D-Lactate (C) -0.8 +0.5 N.D. N.D. N.D.
carbon source D-Galactose (C) -0.7 +0.5 N.D. N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) -0.6 +0.6 N.D. N.D. N.D.
r2a outgrowth control R2A outgrowth control +0.7 -0.5 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 +0.7 N.D. N.D. N.D.
r2a outgrowth control R2A outgrowth control +1.0 +0.2 N.D. N.D. N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 +0.2 N.D. N.D. N.D.
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