Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005898 and ABIE53_005899 are separated by 28 nucleotidesABIE53_005899 and ABIE53_005900 are separated by 233 nucleotidesABIE53_005900 and ABIE53_005901 are separated by 6 nucleotidesABIE53_005901 and ABIE53_005902 are separated by 346 nucleotides ABIE53_005898: ABIE53_005898 - GNAT superfamily N-acetyltransferase, at 2,214,224 to 2,214,685 _005898 ABIE53_005899: ABIE53_005899 - MFS family permease, at 2,214,714 to 2,215,454 _005899 ABIE53_005900: ABIE53_005900 - hypothetical protein, at 2,215,688 to 2,216,002 _005900 ABIE53_005901: ABIE53_005901 - hypothetical protein, at 2,216,009 to 2,216,269 _005901 ABIE53_005902: ABIE53_005902 - 2-methylisocitrate lyase-like PEP mutase family enzyme, at 2,216,616 to 2,217,497 _005902
Group Condition ABIE53_005898 ABIE53_005899 ABIE53_005900 ABIE53_005901 ABIE53_005902
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.2 -2.8 N.D. -3.0 +0.6
carbon source propionate (C) -0.0 -0.2 N.D. +0.1 -4.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -2.5 N.D. -1.5 -1.0
carbon source propionate (C) -0.1 -0.2 N.D. -0.0 -4.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -2.4 N.D. -1.2 -1.0
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.2 -2.3 N.D. -2.0 +0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.2 N.D. -0.3 -1.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -0.3 N.D. -0.7 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 N.D. +0.2 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.2 N.D. +0.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.1 N.D. -0.8 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -1.1 N.D. -0.3 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -0.7 N.D. +0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.6 -0.2 N.D. +0.1 +0.2
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.7 -0.8 N.D. -0.5 -0.1
r2a no shaking R2A no shaking +0.2 -0.5 N.D. -0.8 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.0 N.D. +0.1 -1.2
carbon source Azelaic 20 mM (C) +0.5 -0.4 N.D. -0.5 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.0 N.D. +0.2 +1.0
carbon source D-Galacturonic Acid (C) +0.8 -0.4 N.D. -0.4 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.2 -0.6 N.D. -0.2 -0.0
carbon source D-Mannose (C) +0.8 -0.0 N.D. -0.8 +0.4
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 -0.5 N.D. -0.5 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.6 N.D. +0.3 -0.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM +0.4 -0.3 N.D. +0.5 +0.7
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.3 +0.0 N.D. -0.5 +1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.5 N.D. +0.5 -0.3
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.1 +0.1 N.D. +0.3 +1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.5 N.D. +0.6 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.3 N.D. +0.6 +1.7
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