Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005895 and ABIE53_005896 are separated by 62 nucleotidesABIE53_005896 and ABIE53_005897 are separated by 54 nucleotidesABIE53_005897 and ABIE53_005898 are separated by 39 nucleotidesABIE53_005898 and ABIE53_005899 are separated by 28 nucleotides ABIE53_005895: ABIE53_005895 - nicotinamide phosphoribosyltransferase, at 2,211,117 to 2,212,562 _005895 ABIE53_005896: ABIE53_005896 - ketosteroid isomerase-like protein, at 2,212,625 to 2,213,224 _005896 ABIE53_005897: ABIE53_005897 - prolyl 4-hydroxylase, at 2,213,279 to 2,214,184 _005897 ABIE53_005898: ABIE53_005898 - GNAT superfamily N-acetyltransferase, at 2,214,224 to 2,214,685 _005898 ABIE53_005899: ABIE53_005899 - MFS family permease, at 2,214,714 to 2,215,454 _005899
Group Condition ABIE53_005895 ABIE53_005896 ABIE53_005897 ABIE53_005898 ABIE53_005899
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 -0.8 -0.3 -1.2 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -1.1 +0.1 -0.0 -2.5
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.0 -0.0 +0.1 -0.2 -2.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.6 +0.3 -0.1 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -0.4 +0.2 -1.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.5 +0.2 -0.5 -1.2
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.1 -0.3 +0.2 +0.2 -2.3
carbon source Shikimic Acid 5 mM (C) -0.5 -0.1 -0.1 -0.8 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.9 +0.2 -1.0 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.2 -0.1 -1.2 -0.3
nitrogen source histamine 2mM N source -0.2 -0.1 +0.4 -1.1 -0.1
plant outgrowth control Plant outgrowth control -0.4 +0.5 -0.0 -0.8 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 -0.0 +0.4 -0.4
carbon source D-Glucosamine Hydrochloride (C) -0.2 -0.5 -0.2 +0.6 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.7 -0.0 +0.8 -0.4
carbon source D-Galacturonic Acid (C) -0.0 -0.8 +0.2 +0.8 -0.4
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +0.1 +0.2 -0.6 +0.7 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.2 +0.4 -0.7 +0.3
soil extract Serotonin 5 mM in soil extract -0.1 +0.2 -0.1 -0.7 +0.7
stress Growth in presence of pinene +0.1 -0.3 +0.1 -0.6 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.8 +0.2 +0.1 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.8 +0.7 +0.6 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.2 +0.3 +1.0 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.0 -0.1 +1.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.1 +0.3 +0.4 +0.5
carbon source Tween 20 (C) +0.2 -0.5 +0.3 +0.8 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.2 +0.3 -0.4 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 +0.1 +0.7 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.0 +0.6 -0.1 +0.9
stress M9 with Chloride 200 mM -0.0 +0.3 +0.6 +0.9 +0.1
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