Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005883	ABIE53_005884	ABIE53_005885	ABIE53_005886	ABIE53_005887
nitrogen source	Ammonium chloride 30 mM (N)	+0.3	+1.2	-4.0	-3.9	-4.1
carbon source	L-Lactate (C)	+0.1	+2.5	-4.3	-3.4	-5.1
carbon source	L-Lactate (C)	+0.2	+2.6	-4.3	-3.6	-4.7
nitrogen source	1-aminocyclopropane-1-carboxylate (ACC) (N)	-0.0	+0.8	-2.9	-2.1	-4.1
nitrogen source	1-aminocyclopropane-1-carboxylate (ACC) (N)	+0.1	+0.7	-2.7	-3.0	-2.3
nitrogen source	Ammonium chloride 0.5 mM (N)	+0.2	+1.3	-2.7	-2.7	-2.9
nitrogen source	Ammonium chloride 0.5 mM (N)	+0.1	+1.0	-2.4	-2.4	-2.3
carbon source	D,L-Lactate (C)	+0.3	+1.4	-2.1	-2.3	-3.1
carbon source	L-Rhamnose (C)	+0.2	-0.1	-2.1	-2.0	-1.4
nitrogen source	Xanthine 5 mM (N)	-0.1	-0.1	-1.6	-1.8	-1.3
carbon source	L-Rhamnose (C)	+0.4	+0.1	-1.4	-1.3	-1.2
nitrogen source	histamine 5mM N source	+0.1	+0.5	-1.7	-1.0	-1.3
nitrogen source	histamine 5mM N source	+0.2	+0.4	-1.1	-1.1	-1.6
carbon source	L-Fucose (C)	+0.3	-0.3	-0.9	-0.9	-1.4
carbon source	D,L-Lactate (C)	+0.0	+1.2	-1.2	-1.5	-1.4
nitrogen source	histamine 2mM N source	-0.2	+0.5	-1.3	-1.3	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.1	-0.1	-1.0	-0.4	-1.5
carbon source	Acetylated xylan 10 g/L (C)	+0.1	-0.9	-0.8	-0.1	-0.7
nitrogen source	histamine 2mM N source	+0.1	+0.7	-1.1	-0.9	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.3	+0.4	+0.0	-1.7
carbon source	Shikimic Acid 5 mM (C)	+0.0	-0.3	-0.6	+0.0	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.2	-0.3	+0.1	-1.2
carbon source	Acetylated xylan 10 g/L (C)	+0.3	-0.1	-0.5	+0.1	-1.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.3	-0.2	-0.1	-0.1	-1.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.6	-0.2	-0.4	-0.8	-0.0
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.7	-0.3	-0.5	+0.2	+0.7
stress	R2A with Chloride 200 mM	-0.7	+0.2	-0.5	+0.0	+0.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	+0.6	-0.3	+0.7	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.4	+0.1	-0.3	+0.3	+1.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.2	-0.5	-0.5	+2.4