Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005811 and ABIE53_005812 are separated by 143 nucleotidesABIE53_005812 and ABIE53_005813 are separated by 92 nucleotidesABIE53_005813 and ABIE53_005814 are separated by 324 nucleotidesABIE53_005814 and ABIE53_005815 are separated by 203 nucleotides ABIE53_005811: ABIE53_005811 - NAD(P)H dehydrogenase (quinone), at 2,116,138 to 2,117,019 _005811 ABIE53_005812: ABIE53_005812 - glutaminase, at 2,117,163 to 2,118,077 _005812 ABIE53_005813: ABIE53_005813 - DHA2 family multidrug resistance protein, at 2,118,170 to 2,119,762 _005813 ABIE53_005814: ABIE53_005814 - phospholipase/carboxylesterase, at 2,120,087 to 2,120,746 _005814 ABIE53_005815: ABIE53_005815 - rod shape-determining protein MreB, at 2,120,950 to 2,122,002 _005815
Group Condition ABIE53_005811 ABIE53_005812 ABIE53_005813 ABIE53_005814 ABIE53_005815
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 -0.2 +0.2 -1.9 -2.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 -0.8 +0.0 -1.3 -0.4
carbon source D-Mannose (C) -0.4 -1.0 +0.6 -1.0 -1.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.0 -0.2 -0.9 -1.1
stress R2A with N-decanoyl-DL-Homoserine lactone 10 uM +0.2 -0.1 -0.1 -2.9 -0.3
carbon source Azelaic 20 mM (C) +0.4 -0.1 -0.0 -4.0 +0.5
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.9 +0.0 -0.3 -2.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -1.1 -0.3 -1.8 -0.4
plant outgrowth control Plant outgrowth control -0.8 -0.6 -0.1 -2.0 +0.9
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -0.8 -0.1 -0.2 -2.0 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.4 -0.1 -3.0 +1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 +0.9 -0.0 -2.9 -0.3
soil extract Indole-3-pyruvic 5 mM in soil extract +0.8 -0.7 -0.7 -1.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 -0.5 -0.0 -0.6 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.0 -0.4 -3.0 +0.5
motility_chemotaxis Motility_chemotaxis, R2A; inner cut +0.5 -0.2 +0.2 -2.7 +0.3
carbon source Glucuronamide (C) +0.8 +0.0 +0.2 -2.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.2 +0.2 -0.7 +1.1
plant outgrowth control Plant outgrowth control +0.5 -0.3 +0.1 -2.2 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.6 -0.1 -1.7 +1.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 +1.3 +0.2 -2.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -1.7 -0.0 +1.0 +1.1
m9 no stress control M9 no stress control -0.9 +0.6 +0.2 +0.9 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.4 +0.2 -2.2 +1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.6 +0.5 -0.1 +1.3 +0.2
carbon source Tween 20 (C) +0.6 -0.9 +0.4 +0.9 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 +0.4 +0.2 -1.4 +2.1
carbon source Cinnamic and Ethanols +0.2 -1.2 +0.0 +1.6 +0.7
plant outgrowth control Plant outgrowth control +0.2 -0.5 -0.3 +1.5 +1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.3 +0.4 +2.3 -0.6
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