Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005804 and ABIE53_005805 are separated by 36 nucleotidesABIE53_005805 and ABIE53_005806 are separated by 48 nucleotidesABIE53_005806 and ABIE53_005807 are separated by 155 nucleotidesABIE53_005807 and ABIE53_005808 are separated by 12 nucleotides ABIE53_005804: ABIE53_005804 - glycosyltransferase involved in cell wall biosynthesis, at 2,107,435 to 2,108,394 _005804 ABIE53_005805: ABIE53_005805 - PST family polysaccharide transporter, at 2,108,431 to 2,109,735 _005805 ABIE53_005806: ABIE53_005806 - transcriptional regulator GlxA family with amidase domain, at 2,109,784 to 2,110,740 _005806 ABIE53_005807: ABIE53_005807 - hypothetical protein, at 2,110,896 to 2,111,108 _005807 ABIE53_005808: ABIE53_005808 - AraC-like DNA-binding protein, at 2,111,121 to 2,111,858 _005808
Group Condition ABIE53_005804 ABIE53_005805 ABIE53_005806 ABIE53_005807 ABIE53_005808
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.4 -0.0 -2.7 -1.9 -0.6
carbon source Laminarin 10 g/L (C) -0.6 -0.4 -0.6 -2.5 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.1 -1.8 -2.0 -0.8
lb_dap plate control LB_DAP agar plate, outgrowth in LB +0.1 -0.6 -0.6 -3.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.3 -1.4 -3.0 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.6 +0.2 -2.3 -1.9
stress R2A with Tricalcium phosphate 0.5 g/L -0.5 -0.4 -0.7 -2.1 -0.5
carbon source Shikimic Acid 5 mM (C) -0.7 -0.4 -0.6 -2.4 +0.2
carbon source Shikimic Acid 5 mM (C) -0.7 -0.3 -0.5 -2.3 +0.1
carbon source Laminarin 10 g/L (C) -0.7 -0.4 -0.1 -1.5 -1.0
carbon source D-Alanine (C) +0.1 -0.5 -0.1 -2.0 -1.0
stress R2A with Tricalcium phosphate 0.5 g/L -0.8 -0.3 +0.3 -1.8 -0.7
plant outgrowth control Plant outgrowth control +0.3 -0.9 -2.4 -0.1 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.6 -0.6 -2.5 +0.4
stress Growth in presence of pinene -0.1 +0.1 -1.4 -1.8 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -1.3 -1.7 +0.1 -0.2
stress R2A with 3-methyl-3-butenol 4.5 g/L +0.0 +0.0 +0.5 -2.4 -0.6
stress M9 with Isopropyl alcohol 21 g/L +0.2 +0.3 +0.1 -1.8 -1.3
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.1 +0.2 -0.3 -2.8 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.2 +0.5 -3.2 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.7 +0.7 -1.2 -0.7
stress M9 with Chloride 200 mM -0.4 -0.2 -0.7 -1.7 +1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.1 +0.5 -2.7 +1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.3 +0.7 +0.8 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.7 +1.0 +0.7 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.6 +1.0 +0.8 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.8 +1.1 +0.9 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.6 +0.7 +0.9 +1.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.0 +0.2 +0.7 +1.4 +1.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.9 +1.6 +1.6 +0.6
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