Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005781 and ABIE53_005782 are separated by 7 nucleotidesABIE53_005782 and ABIE53_005783 are separated by 228 nucleotidesABIE53_005783 and ABIE53_005784 are separated by 619 nucleotidesABIE53_005784 and ABIE53_005785 overlap by 4 nucleotides ABIE53_005781: ABIE53_005781 - VIT1/CCC1 family predicted Fe2+/Mn2+ transporter, at 2,082,459 to 2,082,920 _005781 ABIE53_005782: ABIE53_005782 - hypothetical protein, at 2,082,928 to 2,083,110 _005782 ABIE53_005783: ABIE53_005783 - polyphosphate kinase 2, at 2,083,339 to 2,084,160 _005783 ABIE53_005784: ABIE53_005784 - two-component system sensor kinase FixL, at 2,084,780 to 2,086,135 _005784 ABIE53_005785: ABIE53_005785 - FixJ family two-component response regulator, at 2,086,132 to 2,086,761 _005785
Group Condition ABIE53_005781 ABIE53_005782 ABIE53_005783 ABIE53_005784 ABIE53_005785
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -4.3 -1.8 -0.6 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -4.0 -0.8 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -4.1 -1.6 -0.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -3.4 -2.3 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -3.8 -2.2 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -3.9 -0.9 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -3.9 -1.2 -0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -3.8 -1.5 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -2.7 -2.0 -0.4 N.D.
carbon source shik 20mM -1.0 -4.2 -0.1 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -2.9 -1.7 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -3.0 -1.6 -0.1 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.0 -4.1 -0.9 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -3.6 -0.7 +0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -4.3 -0.7 +0.2 N.D.
carbon source shik 20mM -0.1 -4.3 -0.5 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -3.6 -0.6 -0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -3.4 -1.4 -0.2 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.2 -4.0 -0.2 -0.5 N.D.
stress control RCH2_defined_glucose_5mM with Dimethyl Sulfoxide 1 vol% -0.1 -4.2 -0.4 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -4.3 -0.6 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -4.2 -0.5 -0.3 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.6 -3.7 +0.8 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -3.5 +0.3 +0.3 N.D.
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.2 -4.2 +0.5 +0.2 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.5 -3.8 +0.7 -0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -3.5 -1.1 +1.4 N.D.
stress RCH2_defined_glucose_5mM with Epiandrosterone 5 mM +0.4 -3.8 +0.8 +0.1 N.D.
carbon source Acetylated xylan 10 g/L (C) -1.1 -2.9 +1.5 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -2.8 +1.4 +0.7 N.D.
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