Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005769	ABIE53_005770	ABIE53_005771	ABIE53_005772	ABIE53_005773
soil extract	Adenine 5 mM in soil extract	-1.8	+0.1	N.D.	-3.6	+0.5
phage	Burk2_10	-0.9	-0.3	N.D.	-3.0	+0.2
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	-0.0	-0.7	N.D.	-3.1	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.7	-2.2	N.D.	+0.2	+0.2
stress	RCH2_defined_glucose_5mM with Ferulic Acid 5 mM	-0.7	-0.2	N.D.	-3.0	+0.3
carbon source	Fumarate (C)	-2.5	-0.0	N.D.	-1.2	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.6	-0.8	N.D.	-2.5	-0.7
carbon source	D-Glucosamine Hydrochloride (C)	-0.5	-0.6	N.D.	-2.5	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.1	N.D.	-3.3	+0.4
stress control	RCH2_defined_glucose_5mM with Dimethyl Sulfoxide 1 vol%	-0.2	+0.2	N.D.	-3.1	+0.2
stress	M9 with 3-methyl-3-butenol 4.5 g/L	+0.4	+0.1	N.D.	-3.6	+0.2
carbon source	D-Fructose (C)	-1.3	-0.5	N.D.	-1.6	+0.7
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	+0.9	+0.1	N.D.	-3.2	-0.3
r2a outgrowth control	R2A outgrowth control	+0.6	+0.2	N.D.	-3.1	-0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.2	-0.9	N.D.	-1.7	-0.8
carbon source	L-Proline (C)	-0.9	+0.1	N.D.	-2.2	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	+0.2	N.D.	-3.4	+0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+2.1	-0.9	N.D.	-3.0	-0.2
carbon source	D-Fructose (C)	-0.2	-1.3	N.D.	-1.2	+1.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.3	+0.8	N.D.	-3.2	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.1	+0.1	N.D.	-1.8	-0.8
nitrogen source	histamine 2mM N source	-1.6	-0.7	N.D.	+1.3	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.4	-0.5	N.D.	-2.2	+0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	+1.4	-0.8	N.D.	-1.7	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.7	+0.9	N.D.	-3.5	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.4	+0.4	N.D.	-1.8	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+2.1	+0.1	N.D.	-1.6	-0.1
plant outgrowth control	Plant outgrowth control	+1.9	-0.3	N.D.	+0.8	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+2.1	+0.8	N.D.	-1.0	+0.1
carbon source	Shikimic Acid 5 mM (C)	+1.0	+0.5	N.D.	+2.2	-0.8