Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005767 and ABIE53_005768 are separated by 48 nucleotidesABIE53_005768 and ABIE53_005769 are separated by 659 nucleotidesABIE53_005769 and ABIE53_005770 are separated by 17 nucleotidesABIE53_005770 and ABIE53_005771 are separated by 164 nucleotides ABIE53_005767: ABIE53_005767 - DNA-binding transcriptional LysR family regulator, at 2,067,184 to 2,068,068 _005767 ABIE53_005768: ABIE53_005768 - hypothetical protein, at 2,068,117 to 2,068,287 _005768 ABIE53_005769: ABIE53_005769 - hypothetical protein, at 2,068,947 to 2,069,471 _005769 ABIE53_005770: ABIE53_005770 - Na+/H+ antiporter NhaD/arsenite permease-like protein, at 2,069,489 to 2,070,829 _005770 ABIE53_005771: ABIE53_005771 - hypothetical protein, at 2,070,994 to 2,071,266 _005771
Group Condition ABIE53_005767 ABIE53_005768 ABIE53_005769 ABIE53_005770 ABIE53_005771
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.7 -1.7 -2.2 N.D.
nitrogen source histamine 2mM N source -0.5 -0.7 -1.6 -0.7 N.D.
carbon source butyrate (C) -1.0 -0.1 -1.3 -0.7 N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound +0.3 -0.5 -2.0 -0.7 N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.4 -0.7 -0.9 -0.8 N.D.
carbon source D-Lactate (C) -0.5 +0.4 -2.4 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.5 -2.1 +0.0 N.D.
carbon source a-Ketoglutaric (C) -1.3 +0.5 -0.8 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 +0.5 -2.4 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -0.7 +1.2 -0.6 N.D.
carbon source D,L-Malic Acid (C) -1.8 +0.2 +1.3 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.5 +1.4 -0.5 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract -1.0 +0.5 +1.4 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 +0.2 +1.4 +0.4 N.D.
stress R2A with Chloride 200 mM -1.4 +0.1 +1.5 +0.2 N.D.
plant outgrowth control Plant outgrowth control -0.2 -0.4 +1.7 -0.6 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.5 -0.5 -1.5 +1.1 N.D.
stress M9 with Chloride 200 mM -1.0 +0.4 +1.1 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.2 +1.4 -0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -0.1 +1.2 -0.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 +2.1 -0.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.2 +1.3 +0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 +0.2 +1.9 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.7 +1.9 +0.2 N.D.
carbon source Acetylated xylan 10 g/L (C) +0.7 -0.4 +0.8 +1.0 N.D.
plant outgrowth control Plant outgrowth control +0.6 -0.1 +1.9 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 +0.3 +2.1 +0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.0 +1.7 +0.9 N.D.
carbon source Acetylated xylan 10 g/L (C) +0.9 -0.1 +1.6 +0.2 N.D.
carbon source Shikimic Acid 5 mM (C) +1.0 -0.1 +1.0 +0.7 N.D.
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