Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005761 and ABIE53_005762 are separated by 11 nucleotidesABIE53_005762 and ABIE53_005763 are separated by 80 nucleotidesABIE53_005763 and ABIE53_005764 are separated by 57 nucleotidesABIE53_005764 and ABIE53_005765 are separated by 130 nucleotides ABIE53_005761: ABIE53_005761 - D-alanyl-D-alanine dipeptidase, at 2,062,015 to 2,062,680 _005761 ABIE53_005762: ABIE53_005762 - uncharacterized protein (TIGR02594 family), at 2,062,692 to 2,063,147 _005762 ABIE53_005763: ABIE53_005763 - small multidrug resistance family-3 protein, at 2,063,228 to 2,063,545 _005763 ABIE53_005764: ABIE53_005764 - DNA-binding transcriptional LysR family regulator, at 2,063,603 to 2,064,517 _005764 ABIE53_005765: ABIE53_005765 - DHA2 family methylenomycin A resistance protein-like MFS transporter, at 2,064,648 to 2,066,042 _005765
Group Condition ABIE53_005761 ABIE53_005762 ABIE53_005763 ABIE53_005764 ABIE53_005765
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 -0.6 -0.8 -0.2 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.9 -0.0 -0.0 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 -0.8 -0.4 -0.3 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 -0.3 -0.8 -0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.0 -0.6 -0.0 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.2 -0.8 -0.1 -0.8
plant outgrowth control Plant outgrowth control -0.8 -0.7 -0.7 -0.2 +0.0
plant outgrowth control Plant outgrowth control -1.0 -0.4 -0.9 -0.2 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -0.1 -0.3 -0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.5 -0.3 +0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.7 -0.7 +0.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.0 -1.0 -0.0 +0.4
carbon source Cinnamic and Ethanols -0.2 -0.3 -0.5 +0.3 -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 -0.7 -0.6 -0.4 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.5 -1.1 +0.2 +0.2
plant outgrowth control Plant outgrowth control -0.9 +0.0 -0.6 +0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 -1.0 +0.1 +0.6
carbon source Shikimic Acid 5 mM (C) -0.2 -0.6 -1.1 +0.1 +0.8
carbon source D-Fructose (C) -0.3 +0.4 -0.8 -0.6 +0.3
carbon source Shikimic Acid 5 mM (C) -0.8 -0.3 -0.7 +0.0 +0.8
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 -0.4 -0.2 +0.4 +0.2
carbon source Laminarin 10 g/L (C) -0.7 -0.3 -0.4 +0.1 +1.0
stress R2A with Tricalcium phosphate 0.5 g/L -0.6 -0.7 +0.2 +0.1 +0.6
stress control RCH2_defined_glucose_5mM with no stress +0.5 +0.5 -0.4 -0.6 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.4 -0.7 +0.3 +1.0
m9 no stress control M9 no stress control +0.8 +0.4 +0.6 -0.3 -0.4
stress M9 with 3-methyl-2-butenol 2 g/L +0.7 +0.4 +0.7 -0.1 -0.1
m9 no stress control M9 no stress control +1.0 +0.4 +0.7 -0.2 -0.2
m9 no stress control M9 no stress control +0.5 +0.7 +0.8 +0.2 -0.4
stress M9 with 3-methyl-2-butenol 2 g/L +0.6 +0.4 +0.7 +0.5 -0.1
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