Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005711 and ABIE53_005712 are separated by 46 nucleotidesABIE53_005712 and ABIE53_005713 overlap by 8 nucleotidesABIE53_005713 and ABIE53_005714 are separated by 112 nucleotidesABIE53_005714 and ABIE53_005715 are separated by 115 nucleotides ABIE53_005711: ABIE53_005711 - putative porin, at 2,010,655 to 2,011,758 _005711 ABIE53_005712: ABIE53_005712 - iron(III) transport system ATP-binding protein, at 2,011,805 to 2,012,872 _005712 ABIE53_005713: ABIE53_005713 - iron(III) transport system permease protein, at 2,012,865 to 2,014,634 _005713 ABIE53_005714: ABIE53_005714 - iron(III) transport system substrate-binding protein, at 2,014,747 to 2,015,835 _005714 ABIE53_005715: ABIE53_005715 - two-component system response regulator TctD, at 2,015,951 to 2,016,646 _005715
Group Condition ABIE53_005711 ABIE53_005712 ABIE53_005713 ABIE53_005714 ABIE53_005715
carbon source Trisodium citrate (C) +0.4 -1.8 -1.2 -1.6 -1.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 -0.3 -0.6 -1.8 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -1.1 -0.8 -0.7 -0.6
carbon source Trisodium citrate (C) +0.5 -0.7 -1.3 -1.1 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.0 -0.6 -0.8 -0.7
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM -0.2 -0.8 -0.3 -1.1 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.9 -1.1 -0.2 -0.7
carbon source Azelaic 20 mM (C) +0.0 -0.9 -0.7 -0.5 -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -0.5 +0.1 -0.9 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.4 -0.8 -0.6 -0.2
carbon source Azelaic 20 mM (C) +0.1 -1.3 -0.3 -0.8 -0.0
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.1 -0.8 -0.3 -1.3 +0.1
carbon source Cinnamic and Ethanols -0.5 +0.1 -0.7 -0.0 -0.8
stress R2A with Clay 500 g/L -0.3 -0.7 +0.2 -0.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.2 -0.6 -0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.2 -0.4 -0.9 +0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 +0.5 -0.9 +0.2 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.5 -0.9 +0.1 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.8 -0.3 -0.4 +0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.8 -0.6 -0.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 +0.5 +0.7 -0.5
carbon source Acetylated xylan 10 g/L (C) -0.3 -0.8 -0.3 +0.9 +0.3
plant outgrowth control Plant outgrowth control +0.4 -0.9 -0.6 +0.9 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.2 +0.9 +0.3 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.2 +0.3 +0.7 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.2 -0.6 -0.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.2 -0.1 +1.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.5 -0.3 +0.6 -0.7
stress RCH2_defined_glucose_5mM with Serotonin 5 mM +0.5 +0.3 -0.4 +0.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.0 +0.8 -0.4 +0.5
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