Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005689 and ABIE53_005690 are separated by 888 nucleotidesABIE53_005690 and ABIE53_005691 are separated by 88 nucleotidesABIE53_005691 and ABIE53_005692 are separated by 48 nucleotidesABIE53_005692 and ABIE53_005693 are separated by 42 nucleotides ABIE53_005689: ABIE53_005689 - hypothetical protein, at 1,989,095 to 1,989,319 _005689 ABIE53_005690: ABIE53_005690 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,990,208 to 1,990,960 _005690 ABIE53_005691: ABIE53_005691 - MFS family permease, at 1,991,049 to 1,992,377 _005691 ABIE53_005692: ABIE53_005692 - L-rhamnonate dehydratase, at 1,992,426 to 1,993,604 _005692 ABIE53_005693: ABIE53_005693 - L-rhamnose 1-dehydrogenase, at 1,993,647 to 1,994,429 _005693
Group Condition ABIE53_005689 ABIE53_005690 ABIE53_005691 ABIE53_005692 ABIE53_005693
carbon source L-Rhamnose (C) +0.4 -4.6 -4.3 -4.5 -3.8
carbon source L-Rhamnose (C) -0.3 -4.4 -2.0 -3.0 -2.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.1 -0.6 -1.6 +0.2
carbon source D-Mannose (C) -1.6 +0.3 -0.3 -0.1 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.0 -1.0 -0.0 -0.6 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.8 +0.3 +0.1 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 +0.5 -1.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -1.1 +0.3 -0.5 -0.4
carbon source L-Proline (C) -0.1 -0.6 -1.2 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.7 +0.9 -0.7 -1.0
stress M9 with Chloride 200 mM -1.2 -0.4 +0.2 +0.1 -0.2
carbon source D-Ribose (C) +0.5 -0.5 -0.6 -0.8 +0.0
carbon source D-Lactate (C) +0.2 -0.3 -0.5 +0.2 -1.0
carbon source Acetylated xylan 10 g/L (C) -0.1 -0.9 +0.6 -0.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.0 -0.9 +0.0 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.7 +0.4 -0.8 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.7 +0.2 -1.9 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.6 -0.8 -0.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.2 +0.4 -0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 +0.4 -0.6 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.4 +0.7 -0.7 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.6 +0.2 -0.4 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.8 -0.3 -0.3 -0.1
carbon source Inosine (C) +0.4 -0.0 -0.5 +1.1 -0.1
carbon source Inosine (C) -0.3 +0.3 +0.4 +1.2 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.7 +1.0 -0.1 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.0 +0.2 +2.1 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.2 +0.9 +1.4 +0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 +0.6 +1.9 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 +0.9 +2.5 -0.0
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