Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005619 and ABIE53_005620 are separated by 62 nucleotidesABIE53_005620 and ABIE53_005621 are separated by 10 nucleotidesABIE53_005621 and ABIE53_005622 are separated by 162 nucleotidesABIE53_005622 and ABIE53_005623 are separated by 94 nucleotides ABIE53_005619: ABIE53_005619 - 2-methylcitrate dehydratase PrpD, at 1,911,282 to 1,912,649 _005619 ABIE53_005620: ABIE53_005620 - acetolactate synthase-1/2/3 large subunit, at 1,912,712 to 1,914,529 _005620 ABIE53_005621: ABIE53_005621 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 1,914,540 to 1,916,006 _005621 ABIE53_005622: ABIE53_005622 - acyl-CoA synthetase (NDP forming), at 1,916,169 to 1,918,268 _005622 ABIE53_005623: ABIE53_005623 - catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme, at 1,918,363 to 1,918,965 _005623
Group Condition ABIE53_005619 ABIE53_005620 ABIE53_005621 ABIE53_005622 ABIE53_005623
carbon source Shikimic Acid 5 mM (C) -0.5 -0.1 +0.1 -0.3 -1.7
stress R2A with Tricalcium phosphate 0.5 g/L -0.9 -0.3 +0.1 +0.3 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.6 -0.2 -0.2 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.7 -0.0 -0.1 -0.5
carbon source Shikimic Acid 5 mM (C) -0.2 +0.1 -0.1 -0.1 -1.3
plant outgrowth control Plant outgrowth control -0.5 -0.4 -0.0 +0.2 -0.7
stress R2A with Tricalcium phosphate 0.5 g/L -0.6 -0.2 -0.0 +0.3 -1.0
carbon source Acetylated xylan 10 g/L (C) +0.2 +0.0 -0.1 +0.2 -1.6
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 -0.2 -0.1 -0.3 -0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.1 -0.6 -0.2 -0.6
plant outgrowth control Plant outgrowth control -0.5 +0.2 -0.1 +0.2 -0.7
carbon source L-Proline (C) +0.4 -0.3 -0.4 +0.1 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.4 +0.3 -0.1 -1.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 -0.2 -0.2 +0.5 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.1 +0.4 +0.2 -0.5
stress M9 with Chloride 200 mM -0.8 -0.2 +0.2 +0.4 -0.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.3 -0.2 +0.0 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.8 +0.3 +0.2 +0.3
carbon source D-Fructose (C) +0.5 -0.1 -0.1 +0.4 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.7 +0.0 -0.2 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 +0.1 -0.2 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 +0.3 +0.1 +0.5
carbon source L-Histidine (C) +0.3 -0.2 +0.3 +0.5 -0.3
carbon source D-Gluconic Acid (C) +0.5 +0.0 +0.2 +0.6 -0.4
soil extract Indole-3-pyruvic 5 mM in soil extract +0.5 -0.3 +0.3 -0.1 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.4 +0.1 +0.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +0.4 -0.4 +0.1 +1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.0 -0.0 +0.2 +1.1
stress M9 with 3-methyl-2-butenol 2 g/L +0.3 +0.5 -0.1 +0.4 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.0 +0.4 +0.5 +1.6
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