Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005480 and ABIE53_005481 overlap by 4 nucleotidesABIE53_005481 and ABIE53_005482 overlap by 43 nucleotidesABIE53_005482 and ABIE53_005483 are separated by 43 nucleotidesABIE53_005483 and ABIE53_005484 overlap by 4 nucleotides ABIE53_005480: ABIE53_005480 - pyrroloquinoline quinone biosynthesis protein D, at 1,759,816 to 1,760,085 _005480 ABIE53_005481: ABIE53_005481 - coenzyme PQQ biosynthesis protein C, at 1,760,082 to 1,760,468 _005481 ABIE53_005482: ABIE53_005482 - coenzyme PQQ biosynthesis protein C, at 1,760,426 to 1,760,821 _005482 ABIE53_005483: ABIE53_005483 - pyrroloquinoline quinone biosynthesis protein B, at 1,760,865 to 1,761,785 _005483 ABIE53_005484: ABIE53_005484 - proline iminopeptidase, at 1,761,782 to 1,762,762 _005484
Group Condition ABIE53_005480 ABIE53_005481 ABIE53_005482 ABIE53_005483 ABIE53_005484
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -5.0 -3.9 -2.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -4.2 -1.5 -1.7 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -2.6 -0.9 -2.5 N.D.
carbon source Glucuronamide (C) N.D. -2.3 -2.1 -1.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.3 -1.7 -1.2 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -2.1 -0.4 -2.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.0 -1.3 -0.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 -2.4 -1.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.6 -2.0 -1.5 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.3 -1.1 -1.2 N.D.
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract N.D. -1.6 +0.2 -2.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.1 -0.3 -1.1 N.D.
carbon source Cinnamic and Ethanols N.D. -0.8 -1.2 -1.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 -0.5 -2.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.8 -1.2 -1.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.2 -1.5 -0.6 N.D.
carbon source Glucuronamide (C) N.D. -1.3 -1.0 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.7 -1.4 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.8 -0.9 -0.4 N.D.
phage Burk1_100 N.D. -0.5 -0.6 -1.8 N.D.
stress R2A with Isopropyl alcohol 21 g/L N.D. -0.2 +0.2 -2.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.2 -0.8 -2.0 N.D.
soil extract Sucrose 5 mM in soil extract N.D. -0.9 +0.5 -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.6 -2.2 +1.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.6 -1.3 +0.9 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -2.0 -0.7 +1.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.3 -0.3 +1.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.7 -0.0 +1.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +1.0 +0.4 -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +1.8 +1.4 -1.0 N.D.
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