Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005458 and ABIE53_005459 are separated by 55 nucleotidesABIE53_005459 and ABIE53_005460 are separated by 10 nucleotidesABIE53_005460 and ABIE53_005461 are separated by 7 nucleotidesABIE53_005461 and ABIE53_005462 are separated by 86 nucleotides ABIE53_005458: ABIE53_005458 - Mn2+/Fe2+ NRAMP family transporter, at 1,734,202 to 1,735,452 _005458 ABIE53_005459: ABIE53_005459 - NodT family efflux transporter outer membrane factor (OMF) lipoprotein, at 1,735,508 to 1,736,941 _005459 ABIE53_005460: ABIE53_005460 - DHA2 family multidrug resistance protein, at 1,736,952 to 1,738,568 _005460 ABIE53_005461: ABIE53_005461 - membrane fusion protein (multidrug efflux system), at 1,738,576 to 1,739,676 _005461 ABIE53_005462: ABIE53_005462 - DNA-binding MarR family transcriptional regulator, at 1,739,763 to 1,740,185 _005462
Group Condition ABIE53_005458 ABIE53_005459 ABIE53_005460 ABIE53_005461 ABIE53_005462
carbon source Acetylated xylan 10 g/L (C) -0.6 +0.2 -0.7 +0.6 -3.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.1 -1.2 -0.2 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -0.8 -1.0 +0.2 -0.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -1.1 -0.0 +0.2 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.2 -1.4 +0.7 -1.6
carbon source Shikimic Acid 5 mM (C) +0.7 -0.6 -0.1 +0.8 -3.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -1.6 -0.6 +0.1 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.3 -1.3 +0.3 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.2 -1.0 +0.5 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 +0.4 -1.0 -0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.5 -0.7 +0.0 -2.3
carbon source D-Glucose (C) +0.3 -0.7 -0.8 +0.3 -0.9
carbon source Acetylated xylan 10 g/L (C) -0.1 -0.4 -0.3 +0.7 -1.5
carbon source D-Lactate (C) -0.6 -0.9 +0.1 +0.5 -0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.0 -0.9 -0.5 -0.6 +1.4
carbon source Shikimic Acid 5 mM (C) +0.4 -0.2 -0.4 +0.6 -1.9
stress R2A with Tricalcium phosphate 0.5 g/L +0.3 +0.5 -0.5 +0.5 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.5 -0.3 -0.8 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 +0.4 -0.5 +0.7 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.4 -0.0 +0.6 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 -0.2 +1.1 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 -0.5 +1.0 -1.0
carbon source Laminarin 10 g/L (C) +0.5 +0.6 -0.9 +0.2 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.3 -0.8 +0.6 -0.9
plant outgrowth control Plant outgrowth control +0.7 -0.6 -0.1 +1.1 -1.2
plant outgrowth control Plant outgrowth control +0.4 +0.1 -0.4 +1.1 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +1.1 -0.3 +0.6 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.5 -0.5 +1.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 -0.2 -0.4 +0.7 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.9 -0.0 +0.7 +0.3 -0.0
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