Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005414 and ABIE53_005415 are separated by 107 nucleotidesABIE53_005415 and ABIE53_005416 are separated by 154 nucleotidesABIE53_005416 and ABIE53_005417 are separated by 294 nucleotidesABIE53_005417 and ABIE53_005418 are separated by 210 nucleotides ABIE53_005414: ABIE53_005414 - acetyl-CoA C-acetyltransferase, at 1,688,765 to 1,689,973 _005414 ABIE53_005415: ABIE53_005415 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,690,081 to 1,690,911 _005415 ABIE53_005416: ABIE53_005416 - AraC-like DNA-binding protein, at 1,691,066 to 1,692,082 _005416 ABIE53_005417: ABIE53_005417 - hypothetical protein, at 1,692,377 to 1,694,065 _005417 ABIE53_005418: ABIE53_005418 - AAHS family benzoate transporter-like MFS transporter, at 1,694,276 to 1,695,634 _005418
Group Condition ABIE53_005414 ABIE53_005415 ABIE53_005416 ABIE53_005417 ABIE53_005418
carbon source D-Sorbitol (C) -0.6 -1.1 -0.4 -0.4 -1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -1.9 -0.6 -0.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 -1.0 -0.8 -0.3 +0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.4 -1.7 -0.6 -0.2
nitrogen source histamine 2mM N source -0.1 -0.8 -0.2 -0.9 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -1.0 -0.8 -0.6 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.1 -0.4 -1.1 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.2 -1.3 -0.7 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 -0.3 -0.9 -0.9
r2a outgrowth control R2A outgrowth control +0.2 -1.4 -0.0 -1.4 +0.2
plant outgrowth control Plant outgrowth control +0.1 -0.6 -0.7 -1.3 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 +0.4 -1.8 +0.1 -0.5
carbon source D,L-Malic Acid (C) -0.1 +0.2 -0.5 -1.5 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.3 -0.7 -1.2 -0.6
plant outgrowth control Plant outgrowth control -1.6 -0.1 +0.5 -0.7 -0.3
r2a outgrowth control R2A outgrowth control +0.2 -0.7 -0.5 -0.9 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -0.8 -0.7 +0.8
stress R2A with Tricalcium phosphate 0.5 g/L +0.7 -0.8 -0.4 -0.6 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -1.3 +0.4 -0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.9 +0.2 -0.8 -1.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -0.3 +0.9 -0.9 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.1 -1.3 +0.4 +1.2
r2a outgrowth control R2A outgrowth control +0.1 -0.6 +0.7 -0.7 +0.3
carbon source Acetylated xylan 10 g/L (C) +0.3 +0.4 -1.0 -0.3 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.8 -0.3 -0.1 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.6 -0.9 +0.2 -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.4 -0.8 +0.2 +1.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.5 +0.5 +0.7 -0.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 +0.3 +0.8 +0.6 -1.0
stress M9 with 3-methyl-2-butenol 2 g/L -0.4 -0.0 +0.5 +0.9 +0.7
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