Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005411 and ABIE53_005412 overlap by 4 nucleotidesABIE53_005412 and ABIE53_005413 overlap by 23 nucleotidesABIE53_005413 and ABIE53_005414 are separated by 963 nucleotidesABIE53_005414 and ABIE53_005415 are separated by 107 nucleotides ABIE53_005411: ABIE53_005411 - type I restriction enzyme S subunit, at 1,685,078 to 1,686,265 _005411 ABIE53_005412: ABIE53_005412 - type I restriction-modification system DNA methylase subunit, at 1,686,262 to 1,686,435 _005412 ABIE53_005413: ABIE53_005413 - type I restriction enzyme M protein, at 1,686,413 to 1,687,801 _005413 ABIE53_005414: ABIE53_005414 - acetyl-CoA C-acetyltransferase, at 1,688,765 to 1,689,973 _005414 ABIE53_005415: ABIE53_005415 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,690,081 to 1,690,911 _005415
Group Condition ABIE53_005411 ABIE53_005412 ABIE53_005413 ABIE53_005414 ABIE53_005415
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -3.8 +0.4 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 -2.0 -0.2 +0.3 +0.3
plant outgrowth control Plant outgrowth control -1.4 -0.9 -0.2 -0.1 -1.0
carbon source D-Ribose (C) -0.1 -2.7 -0.1 -0.2 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.9 -0.3 +0.1 -0.5
stress M9 with 3-methyl-3-butenol 4.5 g/L +0.2 -2.9 -0.1 -0.4 -0.2
carbon source homovanillyl alcohol and Ethanols -0.6 -2.2 -0.1 -0.5 +0.1
carbon source Beta-Lactose (C) -0.1 -2.4 +0.1 -0.4 -0.5
carbon source Shikimic Acid 5 mM (C) -1.2 -1.9 +0.1 +0.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -3.3 +0.2 -0.1 +0.3
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.1 -3.3 -0.2 +0.2 +0.0
plant outgrowth control Plant outgrowth control -1.5 -1.7 -0.0 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -2.4 +0.3 +0.2 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -3.2 +0.5 +0.2 +0.2
plant outgrowth control Plant outgrowth control -1.1 +0.4 -0.4 -1.6 -0.1
plant outgrowth control Plant outgrowth control -0.8 -1.7 -0.1 -0.4 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -2.6 +0.3 +0.2 -0.8
stress R2A with Tricalcium phosphate 0.5 g/L -1.2 -1.5 +0.1 +0.7 -0.8
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -0.4 -2.2 -0.0 -0.2 +0.4
stress M9 with PEG 6000 16 vol% +0.3 -2.1 +0.2 +0.1 -0.9
carbon source L-Phenylalanine (C) -0.1 -2.5 +0.0 -0.3 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -2.9 +0.4 +0.7 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.7 +0.2 -0.6 -1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +2.1 +0.2 -0.5 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 +1.3 +0.0 +0.4 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +3.4 +0.1 -0.6 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 +1.0 +0.2 +0.9 +0.3
stress M9 with 3-methyl-2-butenol 2 g/L +1.7 +1.0 +0.4 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.1 +1.9 +0.9 +0.5 -1.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.4 +0.9 +0.0 +0.8 +0.5
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