Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_005396 and ABIE53_005397 are separated by 155 nucleotidesABIE53_005397 and ABIE53_005398 are separated by 159 nucleotidesABIE53_005398 and ABIE53_005399 are separated by 312 nucleotidesABIE53_005399 and ABIE53_005400 are separated by 91 nucleotides ABIE53_005396: ABIE53_005396 - Lrp/AsnC family leucine-responsive transcriptional regulator, at 1,667,968 to 1,668,435 _005396 ABIE53_005397: ABIE53_005397 - threonine/homoserine/homoserine lactone efflux protein, at 1,668,591 to 1,669,256 _005397 ABIE53_005398: ABIE53_005398 - hypothetical protein, at 1,669,416 to 1,669,925 _005398 ABIE53_005399: ABIE53_005399 - kumamolisin, at 1,670,238 to 1,671,797 _005399 ABIE53_005400: ABIE53_005400 - carboxypeptidase C (cathepsin A), at 1,671,889 to 1,673,541 _005400
Group Condition ABIE53_005396 ABIE53_005397 ABIE53_005398 ABIE53_005399 ABIE53_005400
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.2 -0.7 +0.2 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 -0.5 +0.0 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 +0.3 +0.1 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.3 +0.3 +0.3 -0.5
stress Growth in presence of limonene +0.3 +0.5 -0.4 +0.3 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 +0.4 +0.2 +0.1 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 +0.2 +0.3 -0.3
carbon source Acetylated xylan 10 g/L (C) -0.3 +0.4 +0.4 +0.4 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.3 +0.7 +0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.3 +0.4 +0.5 +0.3
stress R2A with Tricalcium phosphate 0.5 g/L -0.1 +0.3 +0.2 +0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 +0.1 +0.9 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.5 +0.3 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.6 +0.2 +0.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.0 +0.0 +0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.6 +0.0 +0.2 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.2 +0.4 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 +0.3 +0.4 +0.2
plant outgrowth control Plant outgrowth control +0.2 +0.2 +0.3 +0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.2 +0.5 +0.5 +0.2
stress R2A with Tricalcium phosphate 0.5 g/L +0.1 +0.5 +0.4 +0.3 +0.3
r2a outgrowth control R2A outgrowth control +0.2 +0.5 +0.2 +0.5 +0.2
plant outgrowth control Plant outgrowth control +0.0 +0.7 +0.2 +0.4 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.9 +0.6 +0.2 +0.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.5 +0.4 +0.6 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.4 +0.5 +0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.3 +0.4 +0.7 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.8 +0.5 +0.5 +0.2
carbon source Shikimic Acid (C) -0.0 -0.1 +0.0 +2.8 +0.4
carbon source Salicylic and Ethanols -0.0 -0.1 +0.1 +3.2 +0.5
remove
ABIE53_005396
plot		 remove
ABIE53_005397
plot		 remove
ABIE53_005398		 remove
ABIE53_005399
plot		 remove
ABIE53_005400
plot