Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005310	ABIE53_005311	ABIE53_005312	ABIE53_005313	ABIE53_005314
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-1.5	N.D.	-0.1	-3.4	-0.8
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.2	N.D.	-1.1	-2.2	-1.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.3	N.D.	-0.6	-0.8	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	N.D.	-0.1	-1.5	-0.1
stress	R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM	-0.6	N.D.	-0.8	-0.7	-0.7
carbon source	Shikimic Acid 5 mM (C)	-0.9	N.D.	-0.7	-1.3	+0.4
carbon source	Tween 20 (C)	+0.6	N.D.	-1.9	-0.6	-0.6
carbon source	L-Proline (C)	-0.4	N.D.	+0.0	-2.2	+0.4
carbon source	D-Lactate (C)	+0.2	N.D.	-1.0	-2.1	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.1	N.D.	+0.6	-0.5	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	N.D.	-2.8	-0.0	+0.8
carbon source	D-Galacturonic Acid (C)	+0.6	N.D.	-1.7	-1.0	+0.6
carbon source	Glucuronamide (C)	-1.2	N.D.	-1.2	+0.7	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.8	N.D.	-1.3	-0.8	-0.0
carbon source	Acetylated xylan 10 g/L (C)	-1.0	N.D.	+0.5	-1.3	+0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	N.D.	-0.7	+1.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	N.D.	+1.0	-1.2	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	N.D.	-1.2	-0.9	+1.8
plant outgrowth control	Plant outgrowth control	+0.0	N.D.	+0.8	-1.1	+1.0
carbon source	m-Inositol (C)	-0.6	N.D.	-0.5	+1.4	+0.5
carbon source	Shikimic Acid 5 mM (C)	-0.8	N.D.	-0.4	+1.0	+1.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	N.D.	+2.3	-0.6	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.0	N.D.	+0.5	-0.7	+0.6
carbon source	D-Ribose (C)	+0.6	N.D.	-0.4	+0.9	+0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.2	N.D.	+1.3	-0.4	+0.2
carbon source	D-Gluconic Acid (C)	+0.7	N.D.	+1.4	-0.3	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.1	N.D.	+0.6	+1.4	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	N.D.	+2.4	+0.4	-0.2
carbon source	D-Arabinose (C)	+0.8	N.D.	-0.4	+1.7	+1.4
carbon source	D-Arabinose (C)	+0.5	N.D.	+0.1	+2.5	+1.3