Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

Group	Condition	ABIE53_005236	ABIE53_005237	ABIE53_005238	ABIE53_005239	ABIE53_005240
carbon source	L-Phenylalanine (C)	-2.9	-0.2	-0.7	-0.1	-0.3
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-2.5	-1.2	-0.8	-0.6	+1.0
carbon source	L-Phenylalanine (C)	-3.0	-0.2	-0.9	-0.0	-0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.9	-0.1	-1.8	-0.1	+0.8
stress	RCH2_defined_glucose_5mM with Guanine 5 mM	-2.8	-0.6	+0.0	+0.0	-0.8
soil extract	Shikimic Acid 5 mM in soil extract	-3.0	+0.0	-1.1	+0.1	+0.1
stress	RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM	-2.9	-0.0	-0.7	+0.1	+0.3
carbon source	Inosine (C)	-2.9	+0.4	-0.8	-0.0	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.0	-0.2	-1.6	+0.2	+0.5
carbon source	D-Lactate (C)	-2.6	-0.3	-0.5	+0.1	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	-0.7	-2.0	-0.0	+0.4
carbon source	Citric Acid (C)	-3.1	-0.1	+0.4	-0.2	+0.3
carbon source	D-Arabinose (C)	-2.8	-0.1	-0.3	-0.0	+0.8
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	-2.3	-0.1	-0.9	+0.7	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-2.5	+0.7	-1.2	+0.2	+0.6
stress	RCH2_defined_glucose_5mM with Adenine 2 mM	-1.8	-0.1	-1.0	+0.1	+1.0
stress	R2A with Ethanol 2.5 vol%	-2.1	+0.2	-0.6	-0.1	+0.9
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-2.6	+0.6	-0.7	+0.3	+0.7
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	-1.7	+0.5	-1.7	+0.7	+0.6
carbon source	Tween 20 (C)	-2.6	+0.3	-0.5	+0.2	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.4	-0.7	-1.5	-0.4	+0.9
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.4	-1.4	+0.3	+1.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	-0.9	-1.4	+1.0	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+1.2	-1.2	-0.6	-0.6	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.8	+0.0	+1.1	-0.0	+1.0
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A	-1.5	-0.2	+2.2	-0.2	+0.1
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound	-1.6	+0.4	+2.2	-0.3	-0.0
carbon source	Acetylated xylan 10 g/L (C)	+1.4	-0.7	-0.4	-0.2	+1.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+2.1	-0.2	-1.1	-0.0	+0.6
carbon source	Acetylated xylan 10 g/L (C)	+1.1	-0.8	+0.4	+0.2	+1.2