Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005229 and ABIE53_005230 are separated by 192 nucleotidesABIE53_005230 and ABIE53_005231 overlap by 4 nucleotidesABIE53_005231 and ABIE53_005232 are separated by 26 nucleotidesABIE53_005232 and ABIE53_005233 are separated by 322 nucleotides ABIE53_005229: ABIE53_005229 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 1,486,830 to 1,487,615 _005229 ABIE53_005230: ABIE53_005230 - homoprotocatechuate degradation regulator HpaR, at 1,487,808 to 1,488,215 _005230 ABIE53_005231: ABIE53_005231 - hypothetical protein, at 1,488,212 to 1,489,237 _005231 ABIE53_005232: ABIE53_005232 - MFS family permease, at 1,489,264 to 1,490,673 _005232 ABIE53_005233: ABIE53_005233 - malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase, at 1,490,996 to 1,492,519 _005233
Group Condition ABIE53_005229 ABIE53_005230 ABIE53_005231 ABIE53_005232 ABIE53_005233
carbon source Acetylated xylan 10 g/L (C) -0.5 -5.1 -0.5 -0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -3.8 -0.3 +0.3 -1.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -3.8 -0.3 -0.0 -0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.5 -3.2 -0.1 -0.1 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -2.5 -0.6 -0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -4.3 -0.1 -0.5 -0.1
nitrogen source histamine 2mM N source +0.2 -3.4 -0.3 +0.0 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -3.5 +0.2 -0.3 -0.3
carbon source Shikimic Acid 5 mM (C) -0.1 -2.3 -0.1 -1.3 +0.0
carbon source Shikimic Acid 5 mM (C) -0.3 -2.1 +0.1 -1.5 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -4.5 +0.3 +0.1 +0.2
carbon source L-Alanine (C) -0.0 -3.4 +0.1 -0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -2.5 -1.0 -0.5 -0.3
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.1 -3.6 +0.2 -0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -3.8 +0.1 -0.5 -0.4
stress RCH2_defined_glucose_5mM with Guanine 5 mM -0.3 -3.2 -0.1 -0.0 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -4.0 +0.2 +0.4 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -3.4 -0.1 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -3.0 +0.3 -0.2 +0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -3.3 +0.5 +0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -3.2 -0.1 +0.3 +0.2
carbon source butyrate (C) +0.3 -2.7 -0.5 +0.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -2.9 +0.5 -0.6 +0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -2.9 -0.5 -0.5 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -3.1 -0.0 +0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -2.5 -0.6 +0.6 +0.2
carbon source D-Fructose (C) +0.4 -1.8 -1.0 -0.2 +1.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -3.7 +0.3 +1.1 +0.7
carbon source D-Mannose (C) +0.4 -2.4 -0.3 +0.1 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -2.3 +0.9 +0.3 +0.4
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ABIE53_005229
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ABIE53_005230
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ABIE53_005232
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ABIE53_005233
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