Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005221	ABIE53_005222	ABIE53_005223	ABIE53_005224	ABIE53_005225
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	-1.4	-3.7	-3.1
stress	R2A with Isopropyl alcohol 21 g/L	N.D.	-0.3	-5.3	+0.1	-0.2
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+0.1	+0.7	-4.5	-1.8
carbon source	butyrate (C)	N.D.	-0.4	-4.0	-0.5	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.6	-0.6	-4.5	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.4	-1.2	-2.3	-1.7
carbon source	D-Lactate (C)	N.D.	-0.6	-3.6	+0.1	-0.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.4	-0.5	-1.7	-2.2
nitrogen source	histamine 2mM N source	N.D.	+0.1	-1.4	-3.4	+0.1
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	N.D.	-0.6	-4.2	+0.5	-0.2
soil extract	D,L-Malic Acid 5 mM in soil extract	N.D.	-0.3	-3.3	-0.8	+0.2
carbon source	Adenosine (C)	N.D.	-0.4	-3.0	-0.4	-0.6
carbon source	D-Alanine (C)	N.D.	-0.7	-3.0	-0.6	+0.1
carbon source	Glycerol (C)	N.D.	-0.3	-3.1	-0.9	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	-1.4	-0.8	-2.0
stress	M9 with Propan-1-ol 13 g/L	N.D.	-0.5	-3.7	+0.2	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	-3.3	-0.7	-0.1
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	N.D.	-0.3	-3.4	+0.3	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.3	-3.6	+0.4	+0.1
stress	RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM	N.D.	-0.6	-3.4	+0.5	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.3	-2.4	-1.6	+1.0
carbon source	Tween 20 (C)	N.D.	-0.6	-3.5	+0.9	+0.1
carbon source	L-Proline (C)	N.D.	-0.1	-3.6	+0.8	-0.2
stress	RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM	N.D.	-0.5	-3.8	+0.8	+0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	-3.2	+0.8	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+0.2	-2.5	+1.8	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.7	+0.4	-1.4	+2.0
carbon source	Acetylated xylan 10 g/L (C)	N.D.	-0.2	+2.4	+0.1	-1.7
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.3	+1.6	+1.1	-1.9
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.3	+1.3	+2.1	-0.6