Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_005172 and ABIE53_005173 overlap by 1 nucleotidesABIE53_005173 and ABIE53_005174 are separated by 73 nucleotidesABIE53_005174 and ABIE53_005175 are separated by 76 nucleotidesABIE53_005175 and ABIE53_005176 are separated by 50 nucleotides ABIE53_005172: ABIE53_005172 - uncharacterized protein YgbK (DUF1537 family), at 1,426,785 to 1,428,092 _005172 ABIE53_005173: ABIE53_005173 - ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase, at 1,428,092 to 1,428,802 _005173 ABIE53_005174: ABIE53_005174 - D-galactonate transporter, at 1,428,876 to 1,430,210 _005174 ABIE53_005175: ABIE53_005175 - hydroxypyruvate isomerase, at 1,430,287 to 1,431,072 _005175 ABIE53_005176: ABIE53_005176 - nucleoside-diphosphate-sugar epimerase, at 1,431,123 to 1,432,103 _005176
Group Condition ABIE53_005172 ABIE53_005173 ABIE53_005174 ABIE53_005175 ABIE53_005176
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.7 -0.4 -0.7 -2.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -0.0 -0.5 -0.5 -1.7
carbon source L-Histidine (C) -0.3 -0.7 -0.9 -0.5 -0.7
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.2 -0.7 -0.0 -0.9 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.5 -0.2 -0.1 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -0.7 -0.3 -0.6 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 -0.5 -0.3 -0.7 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.4 -0.2 -0.0 -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.7 -0.4 -0.7 -0.7
carbon source D-Galacturonic Acid (C) +0.2 -0.3 -0.2 -0.6 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.8 -0.3 +0.2 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -1.6 +0.6 +0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 -0.8 -0.4 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.3 +0.1 +0.4 -1.7
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.6 -0.4 +0.2 -0.0 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +0.3 -0.4 -0.9 +0.4
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -0.7 +0.5 -0.6 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 +0.1 +0.7 -0.7 -0.3
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.1 -0.8 +0.2 +0.3 -0.7
stress RCH2_defined_glucose_5mM with L-Proline 5 mM +0.5 -0.7 -0.4 -0.3 -0.3
stress R2A with Ethanol 2.5 vol% +0.0 -0.7 +0.4 +0.3 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.6 +0.0 -0.9
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.6 -0.2 +0.3 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.1 +0.3 -1.7 +0.1
stress M9 with Chloride 200 mM -0.7 +0.4 -0.6 +0.3 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.3 -0.7 +0.4 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.8 +0.1 +0.5 -0.3
stress R2A with Chloride 200 mM -0.0 +0.7 +0.2 -0.6 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 -0.1 -0.1 -0.2 +1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 -0.3 +0.6 +0.5
remove
ABIE53_005172
plot		 remove
ABIE53_005173
plot		 remove
ABIE53_005174		 remove
ABIE53_005175
plot		 remove
ABIE53_005176
plot