Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005171 and ABIE53_005172 are separated by 15 nucleotidesABIE53_005172 and ABIE53_005173 overlap by 1 nucleotidesABIE53_005173 and ABIE53_005174 are separated by 73 nucleotidesABIE53_005174 and ABIE53_005175 are separated by 76 nucleotides ABIE53_005171: ABIE53_005171 - putative dehydrogenase, at 1,425,879 to 1,426,769 _005171 ABIE53_005172: ABIE53_005172 - uncharacterized protein YgbK (DUF1537 family), at 1,426,785 to 1,428,092 _005172 ABIE53_005173: ABIE53_005173 - ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase, at 1,428,092 to 1,428,802 _005173 ABIE53_005174: ABIE53_005174 - D-galactonate transporter, at 1,428,876 to 1,430,210 _005174 ABIE53_005175: ABIE53_005175 - hydroxypyruvate isomerase, at 1,430,287 to 1,431,072 _005175
Group Condition ABIE53_005171 ABIE53_005172 ABIE53_005173 ABIE53_005174 ABIE53_005175
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 -0.3 -0.7 -0.4 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -0.3 -0.5 -0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.5 -0.0 -0.1 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.0 -0.0 +0.0 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -0.9 -0.5 -0.3 -0.7
plant outgrowth control Plant outgrowth control -1.1 -0.1 -0.7 -0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 -1.3 +0.1 +0.7 -0.7
carbon source L-Histidine (C) +1.0 -0.3 -0.7 -0.9 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.8 -1.6 +0.6 +0.1
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.6 +0.1 -0.7 -0.4 -0.7
stress M9 with Chloride 200 mM -0.4 -0.7 +0.4 -0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.9 +0.3 -0.4 -0.9
carbon source L-Proline (C) -1.0 -0.5 +0.6 -0.1 +0.3
carbon source D-Sorbitol (C) +0.9 -0.5 -0.3 -0.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.8 +0.1 +0.3 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.1 +1.0 -0.7 +0.0
plant outgrowth control Plant outgrowth control -1.6 +0.1 +1.0 -0.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.5 +0.8 +0.1 +0.5
carbon source D-Galacturonic Acid (C) +0.9 +0.2 -0.3 -0.2 -0.6
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.8 -0.6 +0.5 -0.2 -0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.7 -0.2 -0.4 +0.5
carbon source D-Fructose (C) +1.2 -0.8 +0.2 -0.1 -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.5 +0.6 -0.2 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.6 +0.3 -0.7 +0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.5 -0.6 -0.2 +0.4 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.4 +0.3 -0.6 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 +0.3 -0.7 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.2 +0.4 +0.5 +0.5
carbon source Acetylated xylan 10 g/L (C) +0.4 +1.0 +0.0 +0.8 -0.1
carbon source Laminarin 10 g/L (C) +1.9 +0.6 +0.1 +0.3 +0.2
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ABIE53_005171
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ABIE53_005172
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ABIE53_005174
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ABIE53_005175
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