Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005156 and ABIE53_005157 are separated by 83 nucleotidesABIE53_005157 and ABIE53_005158 are separated by 278 nucleotidesABIE53_005158 and ABIE53_005159 are separated by 633 nucleotidesABIE53_005159 and ABIE53_005160 overlap by 1 nucleotides ABIE53_005156: ABIE53_005156 - D-methionine transport system substrate-binding protein, at 1,409,053 to 1,409,868 _005156 ABIE53_005157: ABIE53_005157 - putative deacylase, at 1,409,952 to 1,411,067 _005157 ABIE53_005158: ABIE53_005158 - lysine/arginine/ornithine transport system substrate-binding protein, at 1,411,346 to 1,412,128 _005158 ABIE53_005159: ABIE53_005159 - putative spermidine/putrescine transport system substrate-binding protein, at 1,412,762 to 1,413,904 _005159 ABIE53_005160: ABIE53_005160 - diguanylate cyclase (GGDEF)-like protein, at 1,413,904 to 1,415,727 _005160
Group Condition ABIE53_005156 ABIE53_005157 ABIE53_005158 ABIE53_005159 ABIE53_005160
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.4 -2.0 -0.2 -0.2
plant outgrowth control Plant outgrowth control -0.4 +0.1 -1.1 -1.0 -0.3
stress R2A with Isopropyl alcohol 21 g/L +0.2 -0.1 -2.5 +0.0 +0.4
motility_chemotaxis Motility_chemotaxis, R2A; inner cut -0.1 +0.0 +0.7 -0.4 -1.5
stress M9 with Chloride 200 mM +0.2 +0.1 -1.8 +0.3 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.4 -0.8 -0.5 +0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.1 -1.5 +0.3 +1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.5 -1.4 +0.6 +0.6
nitrogen source histamine 2mM N source +0.2 +0.1 -0.6 -0.4 +1.2
carbon source D-Fructose (C) -0.2 +0.0 -1.0 +0.5 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.2 -0.8 +0.3 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.3 -0.7 +0.8 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.2 -0.9 +1.6 +0.7
stress RCH2_defined_glucose_5mM with Adenine 2 mM -0.2 -0.1 -0.9 +1.0 +1.1
r2a no shaking R2A no shaking -0.2 +0.1 +1.6 +0.4 -0.9
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.1 -0.2 -0.4 +0.7 +1.4
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.1 -0.4 -0.4 +0.9 +1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.4 +0.9 +0.5 +0.4
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.0 -0.3 -0.1 +1.1 +1.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.6 +1.1 +0.4 +1.0
carbon source L-Rhamnose (C) +0.2 -0.3 +0.4 +0.5 +1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.1 -0.0 +1.0 +1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.1 +0.0 +1.7 +1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.5 +1.0 +0.4 +1.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 -0.4 +1.1 +0.9 +1.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 -0.3 -0.3 +1.9 +2.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.1 +0.8 +2.2 +1.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.2 -0.0 +2.3 +3.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.3 +0.7 +3.3 +3.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.1 +0.5 +3.6 +3.4
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