Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005138	ABIE53_005139	ABIE53_005140	ABIE53_005141	ABIE53_005142
stress	R2A with 3-methyl-3-butenol 4.5 g/L	+0.0	-0.0	-0.0	-1.0	-5.2
carbon source	a-Ketoglutaric (C)	-0.1	+0.1	-0.3	-1.6	-3.5
r2a outgrowth control	R2A outgrowth control	-0.4	-0.1	-0.0	-1.9	-2.5
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.1	+0.1	-0.1	-2.4	-2.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.2	-0.5	-1.4	-2.7
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound	+0.1	+0.1	-0.3	-1.1	-3.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	+0.0	+0.2	-0.8	-3.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.0	-0.3	-0.6	-1.7	-1.9
nitrogen source	histamine 2mM N source	-0.0	+0.3	-0.4	-0.6	-3.7
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A	-0.1	-0.0	+0.1	-3.6	-0.7
r2a outgrowth control	R2A outgrowth control	+0.2	-0.1	-0.2	-2.8	-1.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.3	-0.1	-2.3	-1.9
stress	M9 with Propan-1-ol 13 g/L	-0.2	+0.3	-0.2	-0.3	-3.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.3	-0.3	-0.0	+0.5	-2.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.0	-0.3	-3.0	-0.6
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.6	-0.5	+0.3	-1.6	-1.4
carbon source	Adenosine (C)	-0.4	+0.2	+0.1	-0.5	-3.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.6	+0.4	-0.1	-0.9	-2.4
r2a outgrowth control	R2A outgrowth control	-0.1	+0.5	+0.1	-1.1	-2.8
r2a outgrowth control	R2A outgrowth control	+0.3	+0.1	+0.1	-0.0	-4.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	-0.7	-0.3	+0.5	-3.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	+0.3	-0.5	-0.0	-3.2
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.4	-0.1	-0.6	-2.7
carbon source	casaminos (C)	-0.4	+0.1	-0.3	-2.6	+0.9
carbon source	Shikimic Acid 5 mM (C)	-0.2	+0.6	-0.0	+0.6	-2.8
carbon source	butyrate (C)	-0.1	+0.5	-0.4	+0.7	-2.6
plant outgrowth control	Plant outgrowth control	+0.6	+0.6	+0.3	+0.4	-3.5
carbon source	L-Phenylalanine (C)	+0.4	+0.1	-0.1	+1.2	-3.0
carbon source	Shikimic Acid 5 mM (C)	-0.6	+0.4	-0.1	+1.2	-2.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	+0.3	-1.0	+2.2	+1.3