Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_005125	ABIE53_005126	ABIE53_005127	ABIE53_005128	ABIE53_005129
carbon source	L-Fucose (C)	N.D.	-0.2	-0.6	-0.4	-0.7
carbon source	L-Histidine (C)	N.D.	-0.4	-0.3	-0.4	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.1	-0.9	-0.3	-0.3
carbon source	D-Galacturonic Acid (C)	N.D.	-0.2	-0.3	-0.2	-0.7
carbon source	D-Galactose (C)	N.D.	-0.2	+0.2	-0.3	-1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.0	+0.4	-0.2	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.5	-0.5	-0.3	-0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	-0.3	-0.6	+0.3	+0.4
stress	RCH2_defined_glucose_5mM with Pyridoxal 1 mM	N.D.	-0.9	+0.6	+0.1	+0.0
stress	RCH2_defined_glucose_5mM with Pyridoxal 1 mM	N.D.	-0.5	+0.5	+0.2	-0.2
carbon source	Cinnamic and Ethanols	N.D.	+0.5	-0.7	+0.2	+0.2
carbon source	4-Hydroxybenzoic Acid (C)	N.D.	+0.2	+0.9	-0.2	-0.6
carbon source	Acetylated xylan 10 g/L (C)	N.D.	-0.1	-0.3	+0.1	+0.7
soil extract	D-Glucose 5 mM in soil extract	N.D.	-0.5	+0.6	+0.1	+0.4
carbon source	4-Hydroxybenzoic Acid (C)	N.D.	-0.2	+1.1	-0.1	-0.3
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	N.D.	-0.2	+0.5	-0.1	+0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.2	+0.5	+0.3	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.1	+0.2	-0.2	+1.0
r2a outgrowth control	R2A outgrowth control	N.D.	+0.2	-0.3	+0.4	+0.8
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.7	-0.1	+0.1	+0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	+0.5	+0.1	+0.5
stress	R2A with Tricalcium phosphate 0.5 g/L	N.D.	+0.2	+0.2	+0.3	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.6	+0.8	+0.5	-0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	+0.6	-0.2	+0.6	+0.5
carbon source	Shikimic Acid 5 mM (C)	N.D.	+0.5	+0.1	+0.2	+0.7
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	+0.2	+0.9	+0.5	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.5	+0.5	+0.5	+0.3
r2a outgrowth control	R2A outgrowth control	N.D.	+0.4	+0.2	+0.3	+0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.1	+0.6	+0.6	+0.9
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.1	+0.3	+0.3	+1.9