Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005106 and ABIE53_005107 are separated by 145 nucleotidesABIE53_005107 and ABIE53_005108 are separated by 396 nucleotidesABIE53_005108 and ABIE53_005109 are separated by 75 nucleotidesABIE53_005109 and ABIE53_005110 overlap by 4 nucleotides ABIE53_005106: ABIE53_005106 - LmbE family N-acetylglucosaminyl deacetylase, at 1,355,884 to 1,356,588 _005106 ABIE53_005107: ABIE53_005107 - putative DNA metabolism protein, at 1,356,734 to 1,358,647 _005107 ABIE53_005108: ABIE53_005108 - molybdenum cofactor cytidylyltransferase, at 1,359,044 to 1,359,640 _005108 ABIE53_005109: ABIE53_005109 - xanthine dehydrogenase YagR molybdenum-binding subunit, at 1,359,716 to 1,361,938 _005109 ABIE53_005110: ABIE53_005110 - xanthine dehydrogenase YagS FAD-binding subunit, at 1,361,935 to 1,362,936 _005110
Group Condition ABIE53_005106 ABIE53_005107 ABIE53_005108 ABIE53_005109 ABIE53_005110
carbon source 2-Deoxy-D-Ribose (C) +0.1 -0.0 -2.1 +0.1 -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.0 +0.1 -2.0 -0.0 -0.2
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.2 -0.0 -2.0 -0.1 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.1 -1.3 +0.1 -0.1
nitrogen source histamine 2mM N source -0.4 -0.2 -0.8 -0.1 -0.3
carbon source D,L-Malic Acid (C) -0.2 -0.3 -0.6 -0.5 +0.1
carbon source D-Serine (C) +0.1 -0.2 -0.6 -0.4 -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 -0.3 -0.4 -0.5 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +0.1 -1.7 +0.6 -0.4
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.1 +0.1 -1.0 -0.3 -0.1
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.0 -0.3 -0.9 -0.4 +0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 -0.1 -0.6 -0.1 -0.6
carbon source D-Glucose (C) -0.2 +0.2 -0.8 -0.3 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.2 -1.0 +0.1 -0.2
carbon source D-Gluconic Acid (C) -0.3 +0.4 -1.2 -0.0 +0.2
carbon source Inosine (C) -0.2 +0.2 -1.0 -0.0 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.2 +0.2 +0.3 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.0 -0.9 +0.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -1.3 +0.2 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.2 -1.0 +0.1 +0.3
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM +0.4 -0.1 -0.7 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.0 -0.7 -0.1 +0.3
plant outgrowth control Plant outgrowth control -0.5 +0.3 +0.4 +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.2 -0.3 -0.6 +0.4 +0.1
r2a outgrowth control R2A outgrowth control -0.2 +0.1 +1.0 +0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.2 +1.0 +0.2 -0.3
plant outgrowth control Plant outgrowth control -0.1 +0.5 +0.3 +0.3 +0.6
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 +1.0 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 +1.0 +0.1 -0.0
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.2 +1.4 +0.2 +0.2
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