Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005067 and ABIE53_005068 are separated by 371 nucleotidesABIE53_005068 and ABIE53_005069 are separated by 378 nucleotidesABIE53_005069 and ABIE53_005070 overlap by 23 nucleotidesABIE53_005070 and ABIE53_005071 are separated by 550 nucleotides ABIE53_005067: ABIE53_005067 - MFS family permease, at 1,311,468 to 1,311,938 _005067 ABIE53_005068: ABIE53_005068 - MHS family shikimate/dehydroshikimate transporter-like MFS transporter, at 1,312,310 to 1,313,626 _005068 ABIE53_005069: ABIE53_005069 - hypothetical protein, at 1,314,005 to 1,314,223 _005069 ABIE53_005070: ABIE53_005070 - DNA-binding GntR family transcriptional regulator, at 1,314,201 to 1,314,920 _005070 ABIE53_005071: ABIE53_005071 - acetolactate synthase-1/2/3 large subunit, at 1,315,471 to 1,317,234 _005071
Group Condition ABIE53_005067 ABIE53_005068 ABIE53_005069 ABIE53_005070 ABIE53_005071
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +0.0 -0.5 -4.7 -3.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 -0.1 -0.2 -3.7 -3.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.0 -0.1 -0.6 -0.1 -4.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 -0.0 -0.7 -0.3 -4.0
carbon source shik 5mM -0.3 -4.0 -0.9 -1.6 -0.1
carbon source shik 5mM +0.1 -4.1 -0.9 -1.5 +0.1
carbon source shik 20mM -0.1 -3.3 -0.9 -1.5 -0.1
carbon source shik 20mM +0.0 -3.4 -0.8 -1.5 +0.1
soil extract Shikimic Acid 5 mM in soil extract -0.2 -3.0 -1.1 -1.4 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.1 -0.7 -3.8 -0.9
soil extract Shikimic Acid 5 mM in soil extract -0.2 -3.0 -0.5 -1.2 -0.0
carbon source Shikimic Acid 5 mM (C) -0.3 -3.8 +0.4 -0.8 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.1 -0.8 -2.8 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.1 -0.6 -3.2 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.3 -1.0 -2.4 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.1 -1.2 -3.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.0 -1.1 -2.5 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 -0.0 -0.3 -2.1 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.1 -0.4 -2.4 -0.2
carbon source Shikimic Acid 5 mM (C) +0.0 -3.6 +0.3 -0.6 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 +0.0 +0.1 -2.6 -0.8
carbon source Inosine (C) +0.1 -0.0 -0.8 -3.0 +0.0
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -0.3 -0.2 -0.1 -3.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.1 -0.4 -2.6 +0.5
carbon source Beta-Lactose (C) -0.1 +0.0 -0.5 -2.9 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +0.2 +0.2 +0.9 -3.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.0 -0.6 -2.9 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.0 -0.5 -3.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.1 -0.4 -2.9 +0.7
plant outgrowth control Plant outgrowth control +0.1 +0.2 -0.2 +3.6 +0.2
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