Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005061 and ABIE53_005062 are separated by 176 nucleotidesABIE53_005062 and ABIE53_005063 are separated by 578 nucleotidesABIE53_005063 and ABIE53_005064 are separated by 408 nucleotidesABIE53_005064 and ABIE53_005065 are separated by 88 nucleotides ABIE53_005061: ABIE53_005061 - DNA-binding CsgD family transcriptional regulator, at 1,303,936 to 1,304,934 _005061 ABIE53_005062: ABIE53_005062 - AraC family transcriptional regulator, at 1,305,111 to 1,306,034 _005062 ABIE53_005063: ABIE53_005063 - hypothetical protein, at 1,306,613 to 1,307,038 _005063 ABIE53_005064: ABIE53_005064 - autotransporter adhesin, at 1,307,447 to 1,310,305 _005064 ABIE53_005065: ABIE53_005065 - hypothetical protein, at 1,310,394 to 1,310,522 _005065
Group Condition ABIE53_005061 ABIE53_005062 ABIE53_005063 ABIE53_005064 ABIE53_005065
carbon source Acetylated xylan 10 g/L (C) -2.7 +0.3 -0.5 +0.2 -1.2
carbon source D,L-Malic Acid (C) -0.6 -0.4 -0.8 -0.4 -1.0
carbon source 4-Hydroxybenzoic Acid (C) -0.6 -0.5 -0.7 -0.4 -0.6
carbon source Shikimic Acid 5 mM (C) -1.5 -0.2 -0.4 +0.0 -0.3
carbon source D-Sorbitol (C) -0.2 -0.4 -0.5 -0.4 -0.6
carbon source L-Rhamnose (C) -0.3 -0.1 -1.0 -0.4 -0.3
carbon source D-Arabinose (C) -0.2 -0.5 -0.8 -0.3 -0.2
carbon source Shikimic Acid 5 mM (C) -1.0 -0.1 -0.4 +0.1 -0.5
carbon source Acetylated xylan 10 g/L (C) -2.0 +0.1 +0.3 -0.2 -0.1
carbon source D-Galactose (C) -0.3 -0.3 -0.7 -0.2 -0.3
stress M9 with Ethanol 2.5 vol% -0.5 -0.4 +0.2 -0.1 -1.0
carbon source D-Galacturonic Acid (C) -0.4 -0.5 -0.6 -0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.4 -0.1 +0.2 -1.3
soil extract Indole-3-pyruvic 5 mM in soil extract +0.4 -0.1 +0.0 -0.0 -1.5
stress R2A with 3-methyl-3-butenol 4.5 g/L +0.3 -0.3 +0.2 -0.1 -1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.2 +0.1 -0.1 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.2 +0.3 +0.0 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.2 +0.4 +0.1 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.5 +0.3 +0.3 -1.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.1 -0.6 -0.2 +0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.9 +1.2 +0.3 +0.2 -3.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.0 +0.6 +0.4 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.2 +0.5 +0.3 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 +1.2 +0.3 +0.1 -2.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.5 +0.3 +0.3 -0.5
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.2 +0.5 +0.4 -0.1 +0.7
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +0.2 -0.3 +0.2 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.7 -0.2 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.1 +0.7 +0.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.1 +0.4 +0.1 +0.7
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